IODA Converter with In-Situ Observations Concatenation and ObsError Inflation

[apchoiCMD]

Description

This PR shows that an IODA Converter with Marine In-Situ Observations Concatenation and ObsError Inflation Capabilities from the table that shows various types of in-situ obs ("x" means that the variable is not provided)

Type	Variables	Argo	Bathy	Glider	Tesac	Tropical	xbtctd	drifter	trkob
MetaData	dateTime	-	-	-	-	-	-	-	-
-	depth	-	-	-	-	-	-	$\color{red}{\textsf{x}}$	$\color{red}{\textsf{x}}$
-	latitude	-	-	-	-	-	-	-	-
-	longitude	-	-	-	-	-	-	-	-
-	oceanbasin	-	-	-	-	-	-	-	-
ObsError	waterTemperature salinity	- -	- $\color{red}{\textsf{x}}$	-	-	-	-	- $\color{red}{\textsf{x}}$	-
ObsValue	waterTemperature salinity	- -	- $\color{red}{\textsf{x}}$	-	-	-	-	- $\color{red}{\textsf{x}}$	-
PreQC	waterTemperature salinity	- -	- $\color{red}{\textsf{x}}$	-	-	-	-	- $\color{red}{\textsf{x}}$	-

• Double check on sail drone and axbt in-situ obs soon
• Input yaml will be updated once test inputs are ready

Companion PRs

Nope

Issues

Resolves #1465

Automated CI tests to run in Global Workflow

• atm_jjob
• C96C48_ufs_hybatmDA
• C96C48_hybatmaerosnowDA
• C48mx500_3DVarAOWCDA
• C48mx500_hybAOWCDA
• C96C48_hybatmDA

[apchoiCMD]

Result is here by using ARGO @guillaumevernieres @AndrewEichmann-NOAA @JohnSteffen-NOAA

- gdas.t00z.insitu_profile_argo.2021032400.nc4
- gdas.t06z.insitu_profile_argo.2021032406.nc4
- gdas.t12z.insitu_profile_argo.2021032412.nc4
- gdas.t18z.insitu_profile_argo.2021032418.nc4
- gdas.t00z.insitu_profile_argo.2021032500.nc4
- gdas.t06z.insitu_profile_argo.2021032506.nc4
- gdas.t12z.insitu_profile_argo.2021032512.nc4
- gdas.t18z.insitu_profile_argo.2021032518.nc4
- gdas.t00z.insitu_profile_argo.2021032600.nc4

[guillaumevernieres]

see comments

[emcbot]

Automated GW-GDASApp Testing Results:
Machine: hercules

Start: Tue Feb 11 16:03:27 CST 2025 on hercules-login-1.hpc.msstate.edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Tue Feb 11 16:42:19 CST 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp -E atm_jjob|C96C48_ufs_hybatmDA|C96C48_hybatmaerosnowDA|C48mx500_3DVarAOWCDA|C48mx500_hybAOWCDA|C96C48_hybatmDA
Tests:                                  *Failed*
Tests: Failed at Tue Feb 11 16:50:42 CST 2025
Tests: 97% tests passed, 1 tests failed out of 33
Tests: see output at /work2/noaa/da/role-da/CI/hercules/GDASApp/workflow/PR/1472/global-workflow/sorc/gdas.cd/build/log.ctest

[RussTreadon-NOAA]

Hercules CI failure

Check log.ctest. test_gdasapp_util_insituall2ioda failed. Manually rerun this test with verbose output. Failure due to missing input yaml.

    Start 1598: test_gdasapp_util_insituall2ioda

1598: Test command: /work2/noaa/da/role-da/CI/hercules/GDASApp/workflow/PR/1472/global-workflow/sorc/gdas.cd/build/bin/gdas_obsprovider2ioda.x "../testinput/gdas_insituall2ioda.yaml"
1598: Environment variables:
1598:  OMP_NUM_THREADS=1
1598: Test timeout computed to be: 1500
1598: Exception: Cannot open ../testinput/gdas_insituall2ioda.yaml  (No such file or directory)
1598: terminate called after throwing an instance of 'eckit::CantOpenFile'
1598:   what():  Cannot open ../testinput/gdas_insituall2ioda.yaml  (No such file or directory)
1/1 Test #1598: test_gdasapp_util_insituall2ioda ...Subprocess aborted***Exception:  12.96 sec

[guillaumevernieres]

Thanks @RussTreadon-NOAA .
@apchoiCMD , you probably forgot to create the link to the test yaml in the cmakelists.txt?

[apchoiCMD]

@RussTreadon-NOAA @guillaumevernieres Thanks for heads up and I will look into it as soon as possible.

[emcbot]

Automated GW-GDASApp Testing Results:
Machine: hercules

Start: Wed Feb 12 09:20:13 CST 2025 on hercules-login-1.hpc.msstate.edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Wed Feb 12 09:57:04 CST 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp -E atm_jjob|C96C48_ufs_hybatmDA|C96C48_hybatmaerosnowDA|C48mx500_3DVarAOWCDA|C48mx500_hybAOWCDA|C96C48_hybatmDA
Tests:                                 *SUCCESS*
Tests: Completed at Wed Feb 12 10:02:08 CST 2025
Tests: 100% tests passed, 0 tests failed out of 33

[guillaumevernieres]

👍