Automate the verify tools to submit from start pdy to end pdy#1458
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guillaumevernieres
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AndrewEichmann-NOAA,
JohnSteffen-NOAA,
KatherineLukens-NOAA and
apchoiCMD
JohnSteffen-NOAA
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Jan 27, 2025
JohnSteffen-NOAA
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apchoiCMD
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Look great and have learned a lot from your PR-
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All looks good to me as well |
KatherineLukens-NOAA
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danholdaway
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* develop: added original date (#1570) Update OCEAN_BASIN_FILE_ORION path for marine ctest (#1569) Fixing window_begin and end in yaml for redating ADT (#1565) Save LETKF mean analysis and mean increment for verification (#1566) Update JEDI hashes (20250324) (#1567) Removes obsolete json files from marine bufr2ioda (#1564) Add hybrid 4denvar as a phase3 validation configuration (#1552) Bugfix/ocn ecen (#1550) Bugfix SSS obs for LETKF (#1560) Bugfix ocean ensemble recentering (#1558) apply ci path patch only when running g-w ctests (#1554) Update JEDI hashes (20250317) (#1531) add option to create_experiment.py in create_exp.sh (#1546) Update jcb hashes and support initial IODA stats capability (#1547) Fix GW-CI CTest dependencies (#1534) Converts prepoceanobs to use JCB-style obs list and config files (#1527) JEDI-based ensemble recentering and analysis calculation (#1488) tools for phase3 validation (#1526) Update JEDI hashes (20250306) (#1520) New jcb-gdas # and insitu obs prep bug fix (#1523) Marine in situ obs update (SSS, moorings, drifters) (#1511) Save marine background and analysis spread (#1517) Minor build and install updates and ctest cleanup (#1512) correct logic for upper loop limit in chem_diagb (#1516) Incorporate multi-cycle concatination and separation of variables in post-BUFR observations (#1504) Update JEDI hashes (20250225) (#1475) Add a depth dependent e-fold scale (#1494) Update jcb and da-utils hashes to support land DA. (#1509) Add options to inflate the ensemble while recentering (#1501) Add components to use jcb yamls for marine letkf job (#1486) Add GNSSRO bufr2ioda and json files (#1448) Removal of the marine verification tools (#1499) update logic to identify MSU machine (#1498) IODA Converter with In-Situ Observations Concatenation and ObsError Inflation (#1472) Add sea ice recentering (#1478) marine vrfy bugfix (#1483) add LD_LIBRARY_PATH patch for wcoss2 build (#1484) Bugfix for ensemble recenter + add a test (#1477) Add code changes for the implementation of the low-resolution B (#1441) update spack-stack path in Hera modulefiles (#1471) fixed glider output filename (#1469) add gdas_waveinit to C48mx500_3DVarAOWCDA ctest suite (#1470) update jcb-gdas hash 20250128 (#1466) Time series of omb stats and html doc (#1463) Update marine vrfy HTML codes (#1464) Automate the verify tools to submit from start pdy to end pdy (#1458) Update an offline marine vrfy tool (#1447) Update JEDI hashes (20250127) (#1460)
DavidNew-NOAA
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Jan 16, 2026
It's probably time to move this in it's own repo, but in the meantime,
here's a quick "how to":
#### Create a scratch place to run `run_vrfy.py`. This script will
generate a bunch of sbatch scripts and logs.
```
mkdir /somewhere/scratch
cd /somewhere/scratch
ln -s /path/to/run_vrfy.py . # to be sorted out properly in the future
cp /path/to/vrfy_config.yaml .
module use ...
module load EVA/....
```
#### Edit `vrfy_config.yaml`
It's actually read as a jinja template to render `pslot` if necessary.
Anything that is a templated variable in `vrfy_jobcard.sh.j2` can be
added to the yaml below.
```yaml
pslot: "nomlb"
start_pdy: '20210701'
end_pdy: '20210701'
cycs: ["00", "06", "12", "18"]
run: "gdas"
homegdas: "/work2/noaa/da/gvernier/runs/mlb/GDASApp"
base_exp_path: "/work2/noaa/da/gvernier/runs/mlb/{{ pslot }}/COMROOT/{{ pslot }}"
plot_ensemble_b: "OFF"
plot_parametric_b: "OFF"
plot_background: "OFF"
plot_increment: "ON"
plot_analysis: "OFF"
eva_plots: "ON"
qos: "batch"
hpc: "hercules"
eva_module: "EVA/orion"
```
#### Run the application
```python run_verify.py vrfy_config.yaml```
This will generate the job cards for each cycles and submit the jobs.
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It's probably time to move this in it's own repo, but in the meantime, here's a quick "how to":
Create a scratch place to run
run_vrfy.py. This script will generate a bunch of sbatch scripts and logs.Edit
vrfy_config.yamlIt's actually read as a jinja template to render
pslotif necessary. Anything that is a templated variable invrfy_jobcard.sh.j2can be added to the yaml below.Run the application
python run_verify.py vrfy_config.yamlThis will generate the job cards for each cycles and submit the jobs.