Switch Aerosol DA to use JCB and Jedi class#3125
Merged
WalterKolczynski-NOAA merged 134 commits intoDec 14, 2024
Merged
Conversation
…e bias correction files from tarball (NOAA-EMC#2862)
…on files using jedi class (NOAA-EMC#2862)
…ns analysis scripts (NOAA-EMC#2862)
aerorahul
previously approved these changes
Dec 11, 2024
DavidNew-NOAA
previously approved these changes
Dec 11, 2024
RussTreadon-NOAA
dismissed stale reviews from DavidNew-NOAA and aerorahul
via
caa4500
Contributor
|
Given approvals from @DavidNew-NOAA and @aerorahul , I will set up and run g-w CI for this PR on various machines once new fix files have been staged. @WalterKolczynski-NOAA and @KateFriedman-NOAA : g-w CI for this PR can not begin until the required fix files have been added to EIB staged fix file directories. See g-w issue #3160 for details. Note: We have no WCOSS2 dev access 12/16 through 12/20. If we are unable to run g-w CI for this PR before 12/16, we will need to wait until 12/21 or later for WCOSS2 testing. |
WalterKolczynski-NOAA
added
the
CI-Hera-Ready
emcbot
added
CI-Hera-Building
Contributor
|
Hera C96C48_hybatmaerosnowDA failure g-w stream C96C48_hybatmaerosnowDA job enkfgdas_earc00 fails for 20211220 18Z due to File Since |
Contributor
|
Hera C96C48_hybatmaerosnowDA failure follow up The following change to When the revised g-w issue #3165 open to report this bug. |
emcbot
added
CI-Hera-Running
|
CI Passed on Hera in Build# 1 |
4 tasks
Contributor
|
g-w CI Install Dogwood Hera Orion All CI streams run on Dogwood, Hera, and Orion successfully completed all jobs with the following caveats |
RussTreadon-NOAA
approved these changes
Dec 14, 2024
Contributor
RussTreadon-NOAA
left a comment
RussTreadon-NOAA
left a comment
There was a problem hiding this comment.
g-w CI run on Dogwood, Hera, and Orion with acceptable behavior.
Approve.
Contributor
|
@WalterKolczynski-NOAA : You do not need to set up g-w CI on WCOSS2. I ran on Dogwood (see results above). g-w CI has also been run on Orion. Do we need to run g-w CI on Hercules? |
sbanihash
pushed a commit
to sbanihash/global-workflow
that referenced
this pull request
Dec 14, 2024
This PR switches to using JCB for aerosol DA YAML generation + makes use of the Jedi class refactoring already done by @DavidNew-NOAA for the atmospheric JEDI-based DA. Resolves NOAA-EMC#3035 Note this PR is in draft for 2 reasons. 1) Need associated GDASApp PR to be opened and merged first and 2) requires some fix file updates. This will be coordinated with an issue and linked to this PR once @andytangborn is satisfied with a first-attempt at the fix files. --------- Co-authored-by: RussTreadon-NOAA <Russ.Treadon@noaa.gov> Co-authored-by: DavidNew-NOAA <david.new@noaa.gov>
Contributor
|
Thank you @WalterKolczynski-NOAA |
danholdaway
added a commit
to danholdaway/global-workflow
that referenced
this pull request
Jan 27, 2025
* develop: Remove WAFS files and references from `develop` (NOAA-EMC#3263) fix intel stack version number on c5 (NOAA-EMC#3258) Update gsi_monitor and ufs_utils hashes to recent hashes for C5/C6 build and run (NOAA-EMC#3252) Enable DA cycling on gaea C5/C6 (NOAA-EMC#3255) Copy post-processed sea ice increment for diagnostics (NOAA-EMC#3235) Only run METplus in the 3Dvar tests (NOAA-EMC#3245) Clone, build, and run C48_ATM and C48_S2SW on Gaea C5 and C6 (NOAA-EMC#3106) Add echgres as a dependency only for RUN=enkfgdas, not enkfgfs (NOAA-EMC#3246) Add domain level to wave gridded COM path (NOAA-EMC#3137) CI JJOB Tests using CMake (NOAA-EMC#3214) Make assorted updates to waves (NOAA-EMC#3190) Move WCOSS2 LD_LIBRARY_PATH patches to load_ufsda_modules.sh (NOAA-EMC#3236) Adding a gefs_arch task to GEFS workflow (NOAA-EMC#3211) Add additional GEFS variables needed for AI/ML applications (NOAA-EMC#3221) Add bmat task dependency to marine LETKF task (NOAA-EMC#3224) Resolve bug with LMOD_TMOD_FIND_FIRST setting affecting build on WCOSS2 (NOAA-EMC#3229) Reinstate product groups (NOAA-EMC#3208) Additional fixes for downstream jobs (NOAA-EMC#3187) Turn IAU off during staging job for cold start experiments (NOAA-EMC#3215) Update the gdas.cd hash and enable GDASApp to run on WCOSS2 (NOAA-EMC#3220) Update upload-artifact to v4 (NOAA-EMC#3216) Prevent duplicate case generation in generate_workflows.sh (NOAA-EMC#3217) Update g-w to cycle with C1152 ATM (NOAA-EMC#3206) Separate use of initial increment/perturbation file from REPLAY/+03 ICs (NOAA-EMC#3119) Update gsi_enkf hash and gsi_ver (NOAA-EMC#3207) Remove cpus-per-task from APRUN_OCNANALECEN on WCOSS2 (NOAA-EMC#3212) Remove 5WAVH from AWIPS GRIB2 parm files (NOAA-EMC#3146) Remove multi-grid wave support (NOAA-EMC#3188) Add echgres as a dependency for earc (NOAA-EMC#3202) Ensure OCNRES and ICERES have 3 digits in the archive script (NOAA-EMC#3199) Set runtime shell requirements within Jenkins Pipeline (NOAA-EMC#3171) Add efcs and epos to ufs_hybatm xml (NOAA-EMC#3192) (NOAA-EMC#3193) Fix GEFS and SFS compile flags in build_all.sh (NOAA-EMC#3197) Remove early-cycle EnKF forecast (NOAA-EMC#3185) Fix mod_icec bug in atmos_prod (NOAA-EMC#3167) Create compute build option (NOAA-EMC#3186) Support global-workflow using Rocky 8 on CSPs (NOAA-EMC#2998) Change orog gravity wave drag scheme for grid sizes less than 10km (NOAA-EMC#3175) Switch snow DA to use 2DVar for deterministic and ensemble mean (NOAA-EMC#3163) Update compression options for GEFS history files (NOAA-EMC#3184) Update compression options for high res history files (NOAA-EMC#3178) Turn DO_TEST_MODE off (NOAA-EMC#3177) Hotfix for gdas_arch div/0 (NOAA-EMC#3169) Allow building of the ufs-weather-model, WW3 pre/post execs for GFS, GEFS, SFS in the same clone of global-workflow (NOAA-EMC#3098) Switch Aerosol DA to use JCB and Jedi class (NOAA-EMC#3125) Update ufs-weather-model to 2024-12-06 commit (NOAA-EMC#3145) Enable traditional threading as an option (NOAA-EMC#3149) Update HPC_ACCOUNT on Hercules to fv3-cpu (NOAA-EMC#3164) Turn C96C48_ufs_hybatmDA and C48mx500_3DVarAOWCDA into a regression test (NOAA-EMC#3120) Update GSI analysis jobs to use COMIN/COMOUT (NOAA-EMC#3092) Update HPC Tier Definitions (NOAA-EMC#3138) Add marine hybrid envar (NOAA-EMC#3041) Archive the experiment directory along with git status/diff output (NOAA-EMC#3105) Use stochastic restart patterns on rerun (NOAA-EMC#3077) Point Jenkinsfile back to CI/ (NOAA-EMC#3139) Fix wave restart for cold start and add ic version file (NOAA-EMC#3112) Allow users to override the default account at setup time (NOAA-EMC#3127) Refactor gridded wave post (NOAA-EMC#3014) Update docs related to NOAA CSPs (NOAA-EMC#3043) Allow APP to differ between RUNs (NOAA-EMC#2943) Run one executable for soca2cice (instead of two) (NOAA-EMC#3118) Speed up GSI analysis jobs in CI testing (NOAA-EMC#3115) Make aerosol output frequency variable (NOAA-EMC#2982) Add new stations to GFS BUFR sounding products (NOAA-EMC#3107) JCB-based obs+bias staging, Jedi class updates, and marine B-matrix refactoring (NOAA-EMC#2992) Enable tapering of atm ens perts at the model top (NOAA-EMC#3097) Update JGDAS ENKF POST job (NOAA-EMC#3090) SFS Runs at C96mx100 (NOAA-EMC#2960) Move machine-based options from config.base to host files (NOAA-EMC#3053) Remove RUNDIRS before running CI cases to cover re-run events (NOAA-EMC#3076) CI GitHub pipeline (hotfix) update for fetching repo name (NOAA-EMC#3084) Update JGDAS ENKF ECEN job (NOAA-EMC#3050) Update snow obs processing job (NOAA-EMC#3055) Update to action workflow pipeline in default repo for development (NOAA-EMC#3062) Update to action workflow pipeline in default repo for development (NOAA-EMC#3061) Update workflow pipeline (NOAA-EMC#3060) PW CI pipeline update5 ready for review so it can be merged and tested (NOAA-EMC#3059) Revert "GitHub CI Pipeline update for debugging forked PR support" (NOAA-EMC#3057) GitHub CI Pipeline update for debugging forked PR support (NOAA-EMC#3056) Add more ocean variables for post-processing in GEFS (NOAA-EMC#2995) Auto provisioning of PW clusters from GitHub CI added (NOAA-EMC#3051) Fix the name of the TC tracker filenames in archive.py (NOAA-EMC#3030) Make wxflow links static instead of from link_workflow (NOAA-EMC#3008) Update global jdas enkf diag job with COMIN/COMOUT for COM prefix (NOAA-EMC#2959) Add run and finalize methods to marine LETKF task (NOAA-EMC#2944) Fix wave restarts and GEFS FHOUT/FHMAX (NOAA-EMC#3009) Disabling hyper-threading (NOAA-EMC#2965) GitHub Actions Pipeline Updates for Self-Hosted Runners on PW (NOAA-EMC#3018) CI jekninsfile update hotfix (NOAA-EMC#3038) Update gdas.cd (NOAA-EMC#2978) Add ability to add tag to pslots with generate_workflows (NOAA-EMC#3036) CI update to shell environment with HOMEgfs to HOME_GFS for systems that need the path (NOAA-EMC#3013) Quick updated to Jenkins (health check) launch script (NOAA-EMC#3033) Document the generate_workflows.sh script (NOAA-EMC#3028) Replace gfs_cyc with an interval (NOAA-EMC#2928) Hotfix: Fix generate_workflows.sh optional build flags (NOAA-EMC#3024) Add a tool to run multiple YAML cases locally (NOAA-EMC#3004) Hotfix: Correctly set overwrite option when specified (NOAA-EMC#3021)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
6 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
This PR switches to using JCB for aerosol DA YAML generation + makes use of the Jedi class refactoring already done by @DavidNew-NOAA for the atmospheric JEDI-based DA.
Resolves #3035
Note this PR is in draft for 2 reasons. 1) Need associated GDASApp PR to be opened and merged first and 2) requires some fix file updates. This will be coordinated with an issue and linked to this PR once @andytangborn is satisfied with a first-attempt at the fix files.
Type of change
Change characteristics
How has this been tested?
Checklist