Update author list for 4.0

[ctb]

git shortlog --summary --numbered reports:

   746  C. Titus Brown
    94  Luiz Irber
    34  Laurent Gautier
    17  Tim Head
     7  Connor Tiffany
     5  Olga Botvinnik
     4  Taylor Reiter
     3  brooksph
     3  S. Joshua Swamidass
     2  Titus Brown
     2  Harriet Alexander
     1  swamidass
     1  Arfon Smith
     1  Connor T. Skennerton
     1  Daniel Standage
     1  Katrin Leinweber
     1  Phillip Brooks
     1  Tessa Pierce
     1  ljcohen
     1  pyup.io bot
     1  Andreas Sjödin

I suspect @luizirber numbers are low because of squash and merge :)

I will assume that @halexand @betatim @olgabot @taylorreiter @brooksph @standage @bluegenes and @ljcohen have no problem being co-authors. (Please let me know here or privately if you don't want to be listed on the JOSS paper!)

Arfon I will exclude because his commit e15e197 was only to update the publication record :).

pyup.io is a bot... :)

That leaves:

• Laurent Gautier - many contributions!
• Connor Tiffany - revamped documentation (RST -> Markdown), Change .rst to .md Fix/#340 #356
• S. Joshua Swamidass - updated some tests and code Fixed handling of ambiguous nucleotides, issue #137 #138
• Connor Skennerton - commit 41ad6b9 added code checking on file existence
• Katrin Leinweber - commit d2e2e3f, updating documentation.
• Andreas Sjodin - commit a5c60c7, updating documentation.

[ctb]

hi @katrinleinweber I can't find an e-mail address for you - so I'm pinging you here :). Please drop me a note here or at [email protected] if we can list you as a co-author on our submission of sourmash 2.0.0 to JOSS. Thank you!

[ctb]

@ctSkennerton is in!

[katrinleinweber]

Oh, thank you! Also to JOSS for including non-code contributions. Please find my details at the bottom of https://www.tib.eu/en/research-development/non-textual-materials/focus-of-work/scientific-software/ (ORCiD: 0000-0001-5135-5758) :-)

[ctb]

@swamidass, @katrinleinweber, and @lgautier are all in! Still need to ping Connor Tiffany, and haven't (yet) heard back from Andreas.

Next step is going to be to collect ORCIDs.

[betatim]

I am https://orcid.org/0000-0003-0931-3698

[ctb]

(people might be interested in my draft blog post, https://hackmd.io/xbe_FYaiSReGdfe9q8PwSQ?view)

[ctSkennerton]

My orcid is 0000-0003-1320-4873

[olgabot]

Thank you, Titus! My ORCID is 0000-0003-4412-7970

On Sun, Jan 13, 2019 at 10:55 AM Connor T. Skennerton < ***@***.***> wrote: My orcid is 0000-0003-1320-4873 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#622 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAxNcA0rlA7cjwEVfcGyV5Wp3lvgzvWbks5vC4EwgaJpZM4Z8Zyi> .

-- Olga Botvinnik, Ph.D. www <http://olgabotvinnik.com/> | github <https://github.com/olgabot> | twitter <http://twitter.com/olgabot> | linkedin <http://www.linkedin.com/in/olgabotvinnik>

[bluegenes]

my ORCID: 0000-0002-2942-5331 thx! On Mon, Jan 14, 2019 at 11:28 AM Olga Botvinnik <[email protected]> wrote:

…

Thank you, Titus! My ORCID is 0000-0003-4412-7970 On Sun, Jan 13, 2019 at 10:55 AM Connor T. Skennerton < ***@***.***> wrote: > My orcid is 0000-0003-1320-4873 > > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#622 (comment)>, > or mute the thread > < https://github.com/notifications/unsubscribe-auth/AAxNcA0rlA7cjwEVfcGyV5Wp3lvgzvWbks5vC4EwgaJpZM4Z8Zyi > > . > -- Olga Botvinnik, Ph.D. www <http://olgabotvinnik.com/> | github <https://github.com/olgabot> | twitter <http://twitter.com/olgabot> | linkedin <http://www.linkedin.com/in/olgabotvinnik> — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#622 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AHYdPlhUht-0pSvubPuYj8MaVOs6OnjBks5vDNpDgaJpZM4Z8Zyi> .

[halexand]

Thank you! My orcid is : https://orcid.org/0000-0003-1308-8008

[standage]

My ORCID is 0000-0003-0342-8531.

[johnsolk]

Mine is 0000-0002-3600-7218, thank you!

[taylorreiter]

My ORCID is 0000-0002-7388-421X. Thank you!

[ctb]

now a blog post: http://ivory.idyll.org/blog/2019-authorship-revisiting.html

[swamidass]

Mine is 0000-0003-2191-0778.

I hope we consider adding in support for these two algorithms:
https://pubs.acs.org/doi/abs/10.1021/ci600526a
https://pubmed.ncbi.nlm.nih.gov/25714898/

[ctb]

I hope we consider adding in support for these two algorithms:
https://pubs.acs.org/doi/abs/10.1021/ci600526a
https://pubmed.ncbi.nlm.nih.gov/25714898/

being discussed here: #1230