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671 Open 1,021 Closed
671 Open 1,021 Closed
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Issues list

adjust ZipStorage::from_file to pass errors up on bad zip file
#3398 opened Nov 14, 2024 by ctb
Build Custom Database
#3396 opened Nov 13, 2024 by agombolay
2
how do we get scaled from a RevIndex? rust
#3386 opened Nov 11, 2024 by ctb
4
Saving extra metadata in signature format
#3371 opened Nov 4, 2024 by mr-eyes
6
disabling branchwater feature leads to Python test error: symbol 'revindex_free' not found in library … _lowlevel.so: undefined symbol: revindex_free
#3365 opened Oct 28, 2024 by mr-c
7
improve sourmash tax metagenome lingroup output 5.0 issues to address for a 5.0 release
#3361 opened Oct 24, 2024 by bluegenes
create a downsampled iterator so that downsampling becomes less dependent on clone
#3355 opened Oct 15, 2024 by ctb
2
workflow to convert (many) .sig/.sig.gz files to .sig.zip files + mf.csv files code herein lies code
#3349 opened Oct 13, 2024 by ctb
1
change sourmash.VERSION to sourmash.__version__
#3347 opened Oct 10, 2024 by ctb
returning more & richer information from rust SeqToHash struct/iterator rust
#3339 opened Sep 26, 2024 by ctb
How to online sketch an SRA accession without downloading? doc documentation content or issues fyi Information that is interesting or useful
#3337 opened Sep 25, 2024 by mr-eyes
1
how to intersect sig details for template signatures? rust
#3322 opened Sep 13, 2024 by bluegenes
1
consider how to support more flexible Collection in RevIndex for external storage rust
#3321 opened Sep 10, 2024 by ctb
1
is rayon turned on in conda-forge releases?
#3314 opened Aug 30, 2024 by ctb
consider abundance-weighted bp_match_at_rank in tax
#3313 opened Aug 27, 2024 by bluegenes
HLL improved estimator
#3294 opened Aug 15, 2024 by jianshu93
Can sourmash be used to remove microbal contamination from long reads?
#3291 opened Aug 15, 2024 by spoonbender76
if we deprecate a plugin, is it sensible to release a version of the plugin that removes the entry point?
#3285 opened Aug 11, 2024 by ctb
1
new GenBank databases: draft
#3283 opened Aug 7, 2024 by ctb
1
explore xz compression format?
#3282 opened Aug 7, 2024 by ctb
sourmash release v4.8.11
#3274 opened Aug 1, 2024 by luizirber
13 of 15 tasks
2
2024 ICPPB LIN taxonomy tutorial
#3272 opened Jul 29, 2024 by bluegenes
2024 STAMPS tutorials - "running k-mer analyses with sourmash" venn & upset diagrams, ordination, and presence/absence diagram
#3256 opened Jul 21, 2024 by ctb
3
sketching files containing many small sequences: manysketch is astonishingly fast
#3252 opened Jul 14, 2024 by ctb
5
do tax commands pay attention to md5sum instead of just name? can they?
#3251 opened Jul 14, 2024 by ctb
ProTip! What’s not been updated in a month: updated:<2024-10-14.