Skip to content

Foci Per Nucleus Tool

Volker edited this page Nov 19, 2019 · 8 revisions

The tool detects, counts and measures the foci per nucleus. It reports the number of small, medium sized and big fosci per nucleus. It also measures the area and mean intensity of the nuclei.

foci_input_image.png foci_measurements.png foci_resuls_table.png

Getting started

To install the tool save the file foci_per_nucleus_tool.ijm under macros/toolsets in your FIJI installation.

Select the foci_per_nucleus_tool toolset from the >> button of the ImageJ launcher.

foci_toolbar.png

  • The first button on the toolset opens this help page.
  • The m-button runs the foci-analysis on the current image.
  • The b-button runs the foci-analysis on all the images in a given folder.

Options

Open the options-dialog by right-clicking on the m-button.

foci_options.png

Open the options-dialog by right-clicking on the b-button.

foci_batch_options.png

Methods

Clone this wiki locally