{lang}[intel/2017b] R 3.4.3 (REVIEW)

[boegel]

requires easybuilders/easybuild-framework#2345 and #5328, #5334, #5336 , #5341, #5337, #5343, #5346

now also requires updates to R easyblock: easybuilders/easybuild-easyblocks#1292, easybuilders/easybuild-easyblocks#1297, easybuilders/easybuild-easyblocks#1300

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2612.swalot.os - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/956a89e44f325e93ecb01ac3f9392437 for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2080.delcatty.os - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/4be52396a35c29052d83e3255e75b0ca for a full test report.

[verdurin]

Test report by @verdurin
FAILED
Build succeeded for 35 out of 42 (1 easyconfigs in this PR)
rescomp1 - Linux centos 6.8, Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz, Python 2.7.14
See https://gist.github.com/e1dbf24c5a845468ae997af5e1c4c6a9 for a full test report.

[boegel]

@verdurin util-linux failed with sys-utils/rfkill.c:67:12: error: 'RFKILL_TYPE_FM' undeclared here (not in a function), Java because of missing source tarball

[boegel]

I made this WIP since I plan to go over the open issues related to R first before we merge this...

[hajgato]

R 3.4.3 soon?

[boegel]

@hajgato Hmm, ok, maybe I'll give this another update then, thanks for the info!

This got blocked due to updates to the R easyblock (and a total lack of time from my end to follow up on this).

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2404.golett.os - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 2.7.5
See https://gist.github.com/803e704b7551bee2e9edd296d2e0cc26 for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2004.delcatty.os - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/243111dd99c5c34a5003a696eef57378 for a full test report.

[wpoely86]

Test report by @wpoely86
FAILED
Build succeeded for 24 out of 25 (1 easyconfigs in this PR)
nic200 - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E7-8891 v4 @ 2.80GHz, Python 2.7.5
See https://gist.github.com/f1f9b670260c530d53af6f6a51692a5b for a full test report.

[boegel]

@wpoely86 You'll need to (re)move the existing tarball for Rmpi 0.6-6, seems like it was changed in place...

[wpoely86]

Test report by @wpoely86
FAILED
Build succeeded for 21 out of 22 (1 easyconfigs in this PR)
nic167 - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/ba957a586627fc41440e400e2111673e for a full test report.

[wpoely86]

Test report by @wpoely86
FAILED
Build succeeded for 20 out of 21 (1 easyconfigs in this PR)
nic167 - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/c7015ebf85bfcd6b8d22e4f654d17f05 for a full test report.

[wpoely86]

Test report by @wpoely86
FAILED
Build succeeded for 9 out of 10 (1 easyconfigs in this PR)
nic167 - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/10c337ad49e8fa3731ef2a807fc2e8ad for a full test report.

[verdurin]

Test report by @verdurin
FAILED
Build succeeded for 0 out of 6 (1 easyconfigs in this PR)
rescomp2 - Linux centos 6.8, Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz, Python 2.7.14
See https://gist.github.com/7bec9e4dc60fa7612c7ea10b9ae9b214 for a full test report.

[boegel]

@verdurin Can you check whether the LLVM you're using (LLVM/5.0.0-intel-2017b) had this enabled? 1b43ffc

That should explain the undefined reference errors you're seeing for Mesa.

Still not sure about the util-linux issue though...

sys-utils/rfkill.c:67:12: error: 'RFKILL_TYPE_FM' undeclared here (not in a function)

[boegel]

@verdurin For the util-linux issue, it seems you need a sufficiently recent kernel headers for that version of util-linux...

$ grep RFKILL_TYPE_FM  /usr/include/linux/rfkill.h
 * @RFKILL_TYPE_FM: switch is on a FM radio device.
        RFKILL_TYPE_FM,
$ rpm -q --whatprovides /usr/include/linux/rfkill.h
kernel-headers-3.10.0-693.5.2.el7.ug.x86_64

So I guess we should downgrade to an older version of util-linux?

[boegel]

@verdurin util-linux problem is hopefully fixed with #5480

[wpoely86]

Test report by @wpoely86
SUCCESS
Build succeeded for 10 out of 10 (1 easyconfigs in this PR)
nic167 - Linux centos linux 7.4.1708, Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/020a99a80ace8789d4893c6500f2db88 for a full test report.