Update pandas_ndim branch from main
#5073
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* v3.3.x: update whatsnew title for v3.3 release (SciTools#4939) fix whatsnew (SciTools#4932)
…ols#4935) * Added zonal mean gallery example, continued from @TTV-Intrepid * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added TTVIntrepid to common links for What's New functionality * Fixed zonal mean plotting, add axh * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Minor visual changes, ax3 plotting fix, removed warning suppression. * updated imagerepo for zonal means * updated ci-tests yml to latest iris test data version * updated what's new * updated announcements to one line Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/psf/black: 22.6.0 → 22.8.0](psf/black@22.6.0...22.8.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Mergeback v3.3.0
* Remove deprecated 'python setup.py test' support * add whatsnew entry
* fix setup.py std_names building * refactor
* Fix cube repr for scalar anc_var and cell measures * Add whatsnew * Fix cube summary tests * Review actions: reword whats new, reorder scalar sections in cube printout * Fix cube summary test, update whatsnew * Fix code comment
* Temporarily enable lockfile refresh on push - for testing. * Temporarily enable lockfile refresh on push - for testing. * Temporarily enable lockfile refresh on push - for testing. * Use mamba for lock-file generation. * Simpler package installation. * Add Mamba warning to update_lockfiles.py. * Undo temporary testing changes.
* Updated environment lockfiles * Adjustments for Cartopy v0.21.0 (SciTools/cartopy@fcb784d). * Cartopy >=0.21 pin. * What's New entry. * WIP try netCDF4 pin. * Try pip installing netcdf4==1.6.1 as requested by @ocefpaf. * Revert "Try pip installing netcdf4==1.6.1 as requested by @ocefpaf." This reverts commit ce9f890. * netcdf4!=1.6.1 * Align Conda YAML formatting. Co-authored-by: Lockfile bot <noreply@github.com>
Co-authored-by: Lockfile bot <noreply@github.com>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4.1.1 to 4.1.2. - [Release notes](https://github.com/peter-evans/create-pull-request/releases) - [Commits](peter-evans/create-pull-request@18f9043...171dd55) --- updated-dependencies: - dependency-name: peter-evans/create-pull-request dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/stale](https://github.com/actions/stale) from 5 to 6. - [Release notes](https://github.com/actions/stale/releases) - [Changelog](https://github.com/actions/stale/blob/main/CHANGELOG.md) - [Commits](actions/stale@v5...v6) --- updated-dependencies: - dependency-name: actions/stale dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* update release guide * adress review comments
…for point releases. (SciTools#4980)
* Test the calls implementing Cube and Cubelist printing, and repr_html(). * Reinstate CubeList._repr_html_() method. * Review changes. * Add whatsnew. * Typo in whatsnew. * Update docs/src/whatsnew/3.3.rst Co-authored-by: lbdreyer <lbdreyer@users.noreply.github.com> Co-authored-by: lbdreyer <lbdreyer@users.noreply.github.com>
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* Fix name loader problem; enforce expected type of all cube cell_methods. * Review change: fix import order. * Update imagerepo.json for skipped changes from test-iris-imagehash v0.16.
* Lockfile updates (SciTools#4968) * Updated environment lockfiles * Adjustments for Cartopy v0.21.0 (SciTools/cartopy@fcb784d). * Cartopy >=0.21 pin. * What's New entry. * WIP try netCDF4 pin. * Try pip installing netcdf4==1.6.1 as requested by @ocefpaf. * Revert "Try pip installing netcdf4==1.6.1 as requested by @ocefpaf." This reverts commit ce9f890. * netcdf4!=1.6.1 * Align Conda YAML formatting. Co-authored-by: Lockfile bot <noreply@github.com> * New lockfiles. * What's New entry. * What's New correction. Co-authored-by: Lockfile bot <noreply@github.com>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4.1.2 to 4.1.3. - [Release notes](https://github.com/peter-evans/create-pull-request/releases) - [Commits](peter-evans/create-pull-request@171dd55...671dc9c) --- updated-dependencies: - dependency-name: peter-evans/create-pull-request dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Split iris.fileformats.netcdf into separate load+save submodules. * Fix mutable default. * Fixes. * Fix iris.fileformats.netdf.__all__. * Fix tests. * Fix license header. * Move unit tests for sub-module APIs. * Review changes. * Add whatsnew; slightly improved module docstrings.
* Change deprecated MPL colormap registration - matplotlib/matplotlib#23668. * Adapt benchmark for importing palette to cope with MPL 3.6. * What's New entry. * What's New typo. * Reformat import_iris imports.
* New LBFC-CF mappings based on info from Julian Heming. * Further mappings. * What's New entry.
…ls#4729) * remove ancient workarounds * whatsnew
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* Speed up Cube.subset/Coord.intersect * Add a whatsnew entry
updates: - [github.com/psf/black: 22.8.0 → 22.10.0](psf/black@22.8.0...22.10.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4.1.3 to 4.2.0. - [Release notes](https://github.com/peter-evans/create-pull-request/releases) - [Commits](peter-evans/create-pull-request@671dc9c...b4d5173) --- updated-dependencies: - dependency-name: peter-evans/create-pull-request dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…5020) * Meshcoords take metadata from face/edge coords. * Test fixes. * Added tests for missing-vs-present standard-names and units. * Slight code tidying. * Review changes. * Added whatsnew.
* Added in dim_coord prioritisation within _get_lon_lat_coords * Completed testing for dim coord prioritisation, added what's new entry * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests to include fixtures * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Mostly formatting changes for readability, largely suggested by Payton for better PyTest consistency. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced with throughout * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated docstring in project Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
…Tools#4928) * improve error messages * whitespace fix * edit/fix error messages * add whatsnew entry * Apply suggestions from code review Co-authored-by: Ruth Comer <10599679+rcomer@users.noreply.github.com> * add test Co-authored-by: Ruth Comer <10599679+rcomer@users.noreply.github.com>
* Use reusable workflow for refresh lockfile workflow * Update location of reusable workflows
* Replicate legacy dask behaviour pre dask/dask#9555. * Revert "Replicate legacy dask behaviour pre dask/dask#9555." This reverts commit 7363412. * Accept shared NumPy arrays when copying certain Dask arrays - dask/dask#9555. * Updated lock-files. * What's New entry. * Re-arrange What's New entry.
* fix aggregated_by for derived coords * fix and test for derived coords * improve tests, add whatsnew
* Added zonal mean gallery example, continued from @TTV-Intrepid * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added TTVIntrepid to common links for What's New functionality * Fixed zonal mean plotting, add axh * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Minor visual changes, ax3 plotting fix, removed warning suppression. * updated imagerepo for zonal means * updated ci-tests yml to latest iris test data version * updated what's new * updated announcements to one line * added links to gallery in userguide where relevant * Added seealso tags for more visability, fixed typos * Added what's new entry * Added bullets to subsetting cube for readability Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Migrate iris.experimental.animate to iris.plot. * Advertise iris.experimental.stratify. * IRIS_TEST_DATA_VERSION 2.18. * More IRIS_TEST_DATA_VERSION 2.18.
* WSTARBAR is upward flux * whatsnew
…reate_cube (SciTools#4807) * make _create_cube more generic * reinstate original _create_cube * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix tests * fix tests * fix curvilinear regridding * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix curvilinear regridding * fix curvilinear regridding * fix 1D regridding * improve support for scalar lat-lon * fix regridding for circular case * fix scalar handling * fix mask handling * fix handling of higher dimensional cases * include new derived coord/scalar coord support in tests * remove old _create_cube method * update docstrings * fix regrid_conservative * make _create_cube more robust for extra dims * fix and test for derived coords * add benchmark * address review comments * address review comments * add whatsnew Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: lbdreyer <lbdreyer@users.noreply.github.com>
* fix mule pp field data padding * add test coverage * update exception message * use units modulus * parametrize pp save test * assert dimensionality for save test * add whatsnew entry * parametrize dtype for load test * update whatnew entry * Update lib/iris/tests/unit/fileformats/pp/test__data_bytes_to_shaped_array.py Co-authored-by: Martin Yeo <40734014+trexfeathers@users.noreply.github.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * review actions * add comment * add reviewer to whatnew entry Co-authored-by: Martin Yeo <40734014+trexfeathers@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* added link to the docs archive. * added whatsnew
…ciTools#5054) * More tolerant NetCDF loading by skipping invalid coords etc. * Tolerant loading tests. * What's New entry. * self.monkeypatch comments. * Add integration test. * Include TODO comment. * Use monkeypatch context manager. * Mention CannotAddError in the Whats New. * Another reference to SciTools#5068.
* Updated environment lockfiles * Fix auto update lockfiles (SciTools#5070) * introduce graphviz min pin * update lock files Co-authored-by: Lockfile bot <noreply@github.com> Co-authored-by: Bill Little <bill.james.little@gmail.com>
* Add trajectory interpolate tests for checking mask and dtype * Fix trajectory nearest interpolate data * Fixtures return values; whats new
* cube and io lazy data notes added * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added comments within analysis, as well as palette and iterate, and what's new * fixed docstrings as requested in @trexfeathers review * reverted cube.py for time being * fixed flake8 issue Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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