python3Packages.ibis-framework: disable duckdb test and implementation test by sarahec · Pull Request #420628 · NixOS/nixpkgs

sarahec · 2025-06-27T20:12:42Z

Test failures while running nixpkgs-review on #409698. Disabled these tests.

Probable obsolete duckdb error

D web_page.wp_char_count BETWEEN 5000 AND 5200\n) AS pt\nORDER BY\n  am_pm_ratio\nLIMIT 100'
kwargs = {}

    def raw_sql(self, query: str | sg.Expression, **kwargs: Any) -> Any:
        with contextlib.suppress(AttributeError):
            query = query.sql(dialect=self.name)
>       return self.con.execute(query, **kwargs)
E       duckdb.duckdb.ParserException: Parser Error: syntax error at or near "AT"

ibis/backends/duckdb/__init__.py:93: ParserException

Will revisit this once #409698 merges.

Tests package version, but nix rewrites that version to a specific commit

__________________________ test_builtin_scalar_noargs __________________________
[gw20] linux -- Python 3.12.11 /nix/store/89laaz8x9pdydxzz74p0vd8vdj0szqbq-python3-3.12.11/bin/python3.12

con = <ibis.backends.duckdb.Backend object at 0x7fff0f27f470>

    def test_builtin_scalar_noargs(con):
        @udf.scalar.builtin
        def version() -> str: ...
    
        expr = version()
>       assert con.execute(expr) == f"v{con.version}"
E       AssertionError: assert 'v1.3.1' == 'v1.3.1+g2063...9c6248a907be6'
E         
E         - v1.3.1+g2063dda3e6bd955c364ce8e61939c6248a907be6
E         + v1.3.1

ibis/backends/duckdb/tests/test_udf.py:60: AssertionError
=========================== short test summary info ============================
FAILED ibis/backends/tests/tpc/ds/test_queries.py::test_90[duckdb] - duckdb.duckdb.ParserException: Parser Error: syntax error at or near "AT"
FAILED ibis/backends/duckdb/tests/test_udf.py::test_builtin_scalar_noargs - AssertionError: assert 'v1.3.1' == 'v1.3.1+g2063...9c6248a907be6'
  
  - v1.3.1+g2063dda3e6bd955c364ce8e61939c6248a907be6
  + v1.3.1
= 2 failed, 7757 passed, 242 skipped, 637 xfailed, 2 xpassed in 274.17s (0:04:34) =
(END)

Things done

Add a 👍 reaction to pull requests you find important.

sarahec · 2025-07-06T05:04:16Z

Marking as draft until the prerequisites land.

GaetanLepage · 2025-07-11T09:34:50Z

Marking as draft until the prerequisites land.

@sarahec are we still missing some?

sarahec · 2025-07-11T16:24:19Z

@sarahec are we still missing some?

@GaetanLepage yes. We need #421308 to land first and I have to chase down ~10 packages to fix its nixpkgs-review.

But first, I have to get through bisecting gpytorch. Since there's a staging merge in the middle of the bisect range, it's taking a while to complete.

…ixpkgs-review

sarahec · 2025-07-12T19:18:37Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 420628
Commit: 695fdacd2827564cfc30812410f0026f147036dd

`aarch64-darwin`

❌ 4 packages failed to build:

python312Packages.optuna-dashboard
python312Packages.optuna-dashboard.dist
python313Packages.optuna-dashboard
python313Packages.optuna-dashboard.dist

✅ 425 packages built:

aider-chat-full
aider-chat-full.dist
aider-chat-with-browser
aider-chat-with-browser.dist
aider-chat-with-help
aider-chat-with-help.dist
apkleaks
apkleaks.dist
beets (beetsPackages.beets, beetsPackages.beets-stable)
beets-unstable (beetsPackages.beets-unstable)
beets-unstable.dist (beetsPackages.beets-unstable.dist)
beets-unstable.doc (beetsPackages.beets-unstable.doc)
beets-unstable.man (beetsPackages.beets-unstable.man)
beets.dist (beetsPackages.beets-stable.dist, beetsPackages.beets.dist)
beets.doc (beetsPackages.beets-stable.doc, beetsPackages.beets.doc)
beets.man (beetsPackages.beets-stable.man, beetsPackages.beets.man)
checkov
checkov.dist
cve-bin-tool
cve-bin-tool.dist
das
das.dist
deeptools
deeptools.dist
flattenReferencesGraph
flattenReferencesGraph.dist
jadx
marimo (python313Packages.marimo)
marimo.dist (python313Packages.marimo.dist)
multiqc
multiqc.dist
pianotrans
pianotrans.dist
prowler
prowler.dist
python312Packages.altair
python312Packages.altair.dist
python312Packages.atopile
python312Packages.atopile.dist
python312Packages.ax-platform
python312Packages.ax-platform.dist
python312Packages.backtesting
python312Packages.backtesting.dist
python312Packages.bokeh
python312Packages.bokeh.dist
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python312Packages.chart-studio.dist
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python312Packages.coiled.dist
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python312Packages.compressai.dist
python312Packages.dalle-mini
python312Packages.dalle-mini.dist
python312Packages.dash
python312Packages.dash-bootstrap-components
python312Packages.dash-bootstrap-components.dist
python312Packages.dash-bootstrap-templates
python312Packages.dash-bootstrap-templates.dist
python312Packages.dash.dist
python312Packages.energyflow
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python312Packages.experiment-utilities.dist
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python312Packages.explorerscript.dist
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python312Packages.fastai.dist
python312Packages.gradio
python312Packages.gradio.dist
python312Packages.great-tables
python312Packages.great-tables.dist
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python312Packages.holoviews.dist
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python312Packages.hvplot.dist
python312Packages.ibis-framework
python312Packages.ibis-framework.dist
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python312Packages.intake.dist
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python312Packages.iplotx.dist
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python312Packages.itables.dist
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python312Packages.k-diffusion.dist
python312Packages.kmapper
python312Packages.kmapper.dist
python312Packages.leidenalg
python312Packages.leidenalg.dist
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python312Packages.librosa.dist
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python312Packages.livelossplot.dist
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python312Packages.panel
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python312Packages.piano-transcription-inference
python312Packages.piano-transcription-inference.dist
python312Packages.plotly
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python312Packages.scikit-tda
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python312Packages.skops
python312Packages.skops.dist
python312Packages.skrl
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python312Packages.smolagents
python312Packages.smolagents.dist
python312Packages.spacy
python312Packages.spacy-curated-transformers
python312Packages.spacy-curated-transformers.dist
python312Packages.spacy-loggers
python312Packages.spacy-loggers.dist
python312Packages.spacy-lookups-data
python312Packages.spacy-lookups-data.dist
python312Packages.spacy-transformers
python312Packages.spacy-transformers.dist
python312Packages.spacy.dist
python312Packages.streamlit
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python312Packages.synergy
python312Packages.synergy.dist
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python312Packages.textacy.dist
python312Packages.textnets
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python312Packages.torch-audiomentations
python312Packages.torch-audiomentations.dist
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python313Packages.backtesting.dist
python313Packages.bokeh
python313Packages.bokeh.dist
python313Packages.chart-studio
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python313Packages.coiled
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python313Packages.dash-bootstrap-components.dist
python313Packages.dash-bootstrap-templates
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python313Packages.explorerscript
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python313Packages.fastai.dist
python313Packages.gradio
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python313Packages.holoviews.dist
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python313Packages.hvplot.dist
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python313Packages.intake
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python313Packages.iplotx
python313Packages.iplotx.dist
python313Packages.itables
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python313Packages.k-diffusion
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python313Packages.leidenalg
python313Packages.leidenalg.dist
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python313Packages.llama-index-agent-openai.dist
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python313Packages.llama-index-embeddings-huggingface.dist
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python313Packages.llama-index-graph-stores-neptune.dist
python313Packages.llama-index-indices-managed-llama-cloud
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python313Packages.llama-index-legacy
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python313Packages.llama-index-program-openai.dist
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python313Packages.llama-index-readers-llama-parse.dist
python313Packages.llama-index-readers-s3
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python313Packages.llama-index-readers-twitter.dist
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python313Packages.llama-index-readers-weather.dist
python313Packages.llama-index-vector-stores-chroma
python313Packages.llama-index-vector-stores-chroma.dist
python313Packages.llama-index-vector-stores-google
python313Packages.llama-index-vector-stores-google.dist
python313Packages.llama-index-vector-stores-qdrant
python313Packages.llama-index-vector-stores-qdrant.dist
python313Packages.llama-index.dist
python313Packages.llama-parse
python313Packages.llama-parse.dist
python313Packages.msticpy
python313Packages.msticpy.dist
python313Packages.narwhals
python313Packages.narwhals.dist
python313Packages.nbsmoke
python313Packages.nbsmoke.dist
python313Packages.neurokit2
python313Packages.neurokit2.dist
python313Packages.niaarm
python313Packages.niaarm.dist
python313Packages.optuna
python313Packages.optuna.dist
python313Packages.panel
python313Packages.panel.dist
python313Packages.piano-transcription-inference
python313Packages.piano-transcription-inference.dist
python313Packages.plotly
python313Packages.plotly.dist
python313Packages.pyannote-audio
python313Packages.pyannote-audio.dist
python313Packages.pyannote-pipeline
python313Packages.pyannote-pipeline.dist
python313Packages.reflex
python313Packages.reflex-chakra
python313Packages.reflex-chakra.dist
python313Packages.reflex.dist
python313Packages.resampy
python313Packages.resampy.dist
python313Packages.scikit-tda
python313Packages.scikit-tda.dist
python313Packages.shiny
python313Packages.shiny.dist
python313Packages.skops
python313Packages.skops.dist
python313Packages.skrl
python313Packages.skrl.dist
python313Packages.smolagents
python313Packages.smolagents.dist
python313Packages.spacy
python313Packages.spacy-curated-transformers
python313Packages.spacy-curated-transformers.dist
python313Packages.spacy-loggers
python313Packages.spacy-loggers.dist
python313Packages.spacy-lookups-data
python313Packages.spacy-lookups-data.dist
python313Packages.spacy-transformers
python313Packages.spacy-transformers.dist
python313Packages.spacy.dist
streamlit (python313Packages.streamlit)
streamlit.dist (python313Packages.streamlit.dist)
python313Packages.synergy
python313Packages.synergy.dist
python313Packages.textacy
python313Packages.textacy.dist
python313Packages.torch-audiomentations
python313Packages.torch-audiomentations.dist
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python313Packages.torchcrepe.dist
python313Packages.torchlibrosa
python313Packages.torchlibrosa.dist
python313Packages.vega
python313Packages.vega.dist
python313Packages.wandb
python313Packages.wandb.dist
whisperx (python313Packages.whisperx)
whisperx.dist (python313Packages.whisperx.dist)
quark-engine
quark-engine.dist
theharvester
theharvester.dist
whisper-ctranslate2
whisper-ctranslate2.dist

Error logs: `aarch64-darwin`

python312Packages.optuna-dashboard

collecting 0 items collecting 30 items collecting 127 items collected 221 items

python_tests/artifact/test_backend.py ................. [ 7%]
python_tests/artifact/test_backoff.py .. [ 8%]
python_tests/artifact/test_boto3.py ... [ 9%]
python_tests/artifact/test_file_system.py .. [ 10%]
python_tests/artifact/test_optuna_compatibility.py .. [ 11%]
python_tests/artifact/test_prefix.py .. [ 12%]
python_tests/preferential/samplers/test_gp.py .. [ 13%]
python_tests/preferential/test_samplers.py .Fatal Python error: Segmentation fault

Thread 0x00000003502d3000 (most recent call first):

Thread 0x00000001fc105f00 (most recent call first):
File "/nix/store/brw0knlmj41cxn822agj7mvlsl1m4va7-python3.12-torch-2.7.1/lib/python3.12/site-packages/torch/distributions/multivariate_normal.py", line 187 in init
File "/nix/store/qbkvqqdycq76nwx17zjrk7ly3142aai0-python3.12-gpytorch-1.14/lib/python3.12/site-packages/gpytorch/distributions/multivariate_normal.py", line 65/nix/store/0znljckc2qhpsjs033wjc07xzqiysp3g-pytest-check-hook/nix-support/setup-hook: line 23: 2685 Segmentation fault: 11 /nix/store/q54d9qqlb27g2nf9ja4zsa89gl7b3yvm-python3-3.12.11/bin/python3.12 "${flagsArray[@]}"

python313Packages.optuna-dashboard

python_tests/artifact/test_optuna_compatibility.py .. [ 11%] python_tests/artifact/test_prefix.py .. [ 12%] python_tests/preferential/samplers/test_gp.py .. [ 13%] python_tests/preferential/test_samplers.py .Fatal Python error: Fatal Python error: Segmentation faultSegmentation fault

Thread 0x00000003564d3000 (most recent call first):

Thread 0x00000001fc105f00 (most recent call first):
File "/nix/store/bjy6ax4pygbyd2p60lpc04yzpnimd91x-python3.13-torch-2.7.1/lib/python3.13/site-packages/torch/distributions/multivariate_normal.py", line 187 in init
File "/nix/store/f6bds88bw0k31y2jmazp9mhvb5kcajlp-python3.13-gpytorch-1.14/lib/python3.13/site-packages/gpytorch/distributions/multivariate_normal.py", line 65 in init
File "/nix/store/fqlck1dzxz234z3dclras7vi8yib9vqf-python3.13-pyro-ppl-1.9.1/lib/python3.13/site-packages/pyro/distributions/distribution.py", line 26 in call
File Fatal Python error: Segmentation fault

"/private/tmp/nix-build-python3.13-optuna-dashboard-0.18.0.drv-0/source/optuna_dashboard/preferential/samplers/gp.py", line 137 in posterior
File "/private/tmp/nix-build-python3.13-optuna-dashboard-0.18.0.drv-0/source/optuna_dashboard/preferential/samplers/gp.py", line 385 in sample_relative
File "/nix/store/gvrkpq2nw23rhkjvf3nw6z25lil8y1gm-python3.13-optuna-4.2.1/lib/python3.13/site-packages/optuna/trial/_trial.py", line 71 in relative_params
/nix/store/w2k4627hj4xfsz1kwh3bxblv425yw726-pytest-check-hook/nix-support/setup-hook: line 23: 2687 Segmentation fault: 11 /nix/store/j1spz18w5a10r9nj4wpkyh0cx730rs4z-python3-3.13.4/bin/python3.13 "${flagsArray[@]}"

sarahec · 2025-07-13T00:56:25Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 420628
Commit: 695fdacd2827564cfc30812410f0026f147036dd

`x86_64-linux`

⏩ 2 packages marked as broken and skipped:

picosnitch
picosnitch.dist

✅ 498 packages built:

aider-chat-full
aider-chat-full.dist
aider-chat-with-browser
aider-chat-with-browser.dist
aider-chat-with-help
aider-chat-with-help.dist
apkleaks
apkleaks.dist
beets (beetsPackages.beets, beetsPackages.beets-stable)
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sarahec changed the title ~~python3Packages.ibis-framework: disable tests that break in nixpkgs-review~~ python3Packages.ibis-framework: disable duckdb test and implementation test Jul 12, 2025

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python3Packages.ibis-framework: disable duckdb test and implementation test#420628

python3Packages.ibis-framework: disable duckdb test and implementation test#420628
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sarahec commented Jun 27, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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Probable obsolete duckdb error

Tests package version, but nix rewrites that version to a specific commit

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`aarch64-darwin`

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`x86_64-linux`