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update for VADER PR#586#902

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travissluka merged 3 commits intodevelopfrom
feature/model-data
Jun 22, 2023
Merged

update for VADER PR#586#902
travissluka merged 3 commits intodevelopfrom
feature/model-data

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@travissluka travissluka added waiting for another PR waiting on another pull request to be merged first SOCA Sea-ice, Ocean, and Coupled Assimilation labels Jun 16, 2023
@travissluka travissluka self-assigned this Jun 16, 2023
@travissluka travissluka marked this pull request as ready for review June 16, 2023 18:07
@travissluka travissluka removed the SOCA Sea-ice, Ocean, and Coupled Assimilation label Jun 16, 2023
@travissluka travissluka requested a review from svahl991 June 16, 2023 18:09
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Yep, this looks like it'll work. I was thinking you'd need to change your call to the Vader constructor too, but you're still just using the default value for the second parameter so there's not even that.

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Is it a problem that the CI checks have failed on this PR? Or is that just normal for soca?

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Is it a problem that the CI checks have failed on this PR? Or is that just normal for soca?

the vader branches hadn't had develop merged in at the time

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vader and saber PRs were merged; this PR can be merged now.

@travissluka travissluka merged commit e5812e3 into develop Jun 22, 2023
@travissluka travissluka deleted the feature/model-data branch June 22, 2023 18:08
climbfuji added a commit that referenced this pull request Jul 17, 2023
* Use SABER blocks chaining for training (#852)

* Adapt to name changes in ufo (#867)

* Use VertInterp instead of MarineVertInterp (#874)

* remove linear var change from ensevariance ctest (#881)

* Bugfixes for BUMP (#869)

* A few fixes to the Model to Analysis variable change (#847)

* Remove discontinuities in the balance op  (#885)

* set to min/max instead of 0

* ...

* vanilla vert conv

* tidy sign

* removed jac_mask

* tanh filt

* updated yamls and test refs

* merge develop and update answers after the develop history MESS i created

* code tidy/removed vanilla

---------

Co-authored-by: Travis Sluka <tsluka@ucar.edu>

* default plots (#888)

Co-authored-by: Travis Sluka <tsluka@ucar.edu>

* add VADER to SOCA (#887)

* add vader to build, but dont use it

* add State::fromFieldSet

* variablechange "uses" vader

* switched to ens. templ. (#894)

* Implementation of EnsMeanAndVariance (#892)

* added the ensmeanandvariance app

* ...

---------

Co-authored-by: Travis Sluka <tsluka@ucar.edu>

* Read the std. dev. instead of the variance (#896)

* skip sqrt, saving optional

* forgot test yaml

* Update test/testinput/varchange_bkgerrsoca_stddev.yml

Co-authored-by: Travis Sluka <tsluka@ucar.edu>

---------

Co-authored-by: Travis Sluka <tsluka@ucar.edu>

* Use the generic oops interpolator (#898)

* use oops interpolation

* to_fieldset_ad

* forgot some halo masks

* fix horizfilt

* fix some test answers

* letkf workaround for missing val bug

* work around for getvalues test

* change obs input to have 1 guaranteed land point

* Update version (#899)

* remove ewok repo (#889)

Co-authored-by: Yannick Trémolet <30638944+ytremolet@users.noreply.github.com>

* Merge B matrix-related applications (#890)

* Merge B matrix-related applications

* Trigger tests

---------

Co-authored-by: Benjamin Menetrier <benjamin.menetrier@irit.fr>
Co-authored-by: Travis Sluka <tsluka@ucar.edu>

* update for VADER PR#586 (#902)

* add ModelData

* fix coding norms

* Update CMakeLists.txt

* Fix vertical gradient (#914)

* a fix dvdz

* Updating test references

---------

Co-authored-by: Hyun-Chul.Lee <Hyun-Chul.Lee@noaa.gov>

* libs in soca

* Commend out dirac.x test and disable ecbuild_install_project as we did for fv3-jedi prevent the following error:

-- Configuring done
CMake Error in soca/src/soca/CMakeLists.txt:
  Target "soca" INTERFACE_LINK_DIRECTORIES property contains path:

    "/Users/heinzell/work/ufs-bundle/20230714/ufs-bundle-use-jedi-develop/soca/src/soca/."

  which is prefixed in the source directory.

-- Generating done
CMake Generate step failed.  Build files cannot be regenerated correctly.

* Apply same bug fix as for fv3-jedi to fix missing linker path for MPI libraries due to ESMF bug

---------

Co-authored-by: Benjamin Menetrier <benjamin.menetrier@irit.fr>
Co-authored-by: Wojciech Śmigaj <w.smigaj@gmail.com>
Co-authored-by: Travis Sluka <tsluka@ucar.edu>
Co-authored-by: Guillaume Vernieres <guillaume.vernieres@noaa.gov>
Co-authored-by: Yannick Trémolet <30638944+ytremolet@users.noreply.github.com>
Co-authored-by: Benjamin Menetrier <30638301+benjaminmenetrier@users.noreply.github.com>
Co-authored-by: Kriti Bhargava <kritib@ucar.edu>
Co-authored-by: Hyun-Chul.Lee <Hyun-Chul.Lee@noaa.gov>
Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>
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update to follow VADER #178

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