{numlib}[foss/2023b] DOLFINx v0.9.0, pugixml v1.14, FFCx v0.9.0, ...

[tanmoy1989]

(created using eb --new-pr)

• Requires: {numlib}[foss/2023b] gmsh v4.12.2 and some dependencies #22084
• Requires: {tools}[foss/2023b] petsc4py v3.20.3 #20569
• Requires: {devel}[GCCcore/13.2.0] nanobind v2.5.0 #22414
• Requires: {devel}[GCCcore/13.2.0] robin-map v1.3.0 #22413
• Requires: {lib}[GCCcore/13.2.0] scikit-build-core v0.10.7 #22415
• Requires: CI: Don't require setting exts_default_options for single extensions #22490

[github-actions]

Updated software pugixml-1.14-GCCcore-13.2.0.eb

Diff against pugixml-1.14-GCCcore-12.3.0.eb

easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-12.3.0.eb b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
index edfa9577d6..971243b04a 100644
--- a/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
@@ -6,7 +6,7 @@ version = '1.14'
 homepage = 'https://pugixml.org/'
 description = "pugixml is a light-weight C++ XML processing library"
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/zeux/pugixml/archive/']
@@ -15,7 +15,7 @@ checksums = ['610f98375424b5614754a6f34a491adbddaaec074e9044577d965160ec103d2e']
 
 builddependencies = [
     ('binutils', '2.40'),
-    ('CMake', '3.26.3'),
+    ('CMake', '3.27.6'),
 ]
 
 configopts = " ".join([

Diff against pugixml-1.12.1-GCCcore-11.3.0.eb

easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.3.0.eb b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
index d507f7f7f3..971243b04a 100644
--- a/easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
@@ -1,21 +1,21 @@
 easyblock = 'CMakeMake'
 
 name = 'pugixml'
-version = '1.12.1'
+version = '1.14'
 
 homepage = 'https://pugixml.org/'
 description = "pugixml is a light-weight C++ XML processing library"
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/zeux/pugixml/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['1e28ab24b6e04e013d96f45d25e9f2d04c921dc68c613fd010ecaaad3892c14d']
+checksums = ['610f98375424b5614754a6f34a491adbddaaec074e9044577d965160ec103d2e']
 
 builddependencies = [
-    ('binutils', '2.38'),
-    ('CMake', '3.23.1'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 configopts = " ".join([

Diff against pugixml-1.12.1-GCCcore-11.2.0.eb

easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.2.0.eb

diff --git a/easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.2.0.eb b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
index 0c105e447f..971243b04a 100644
--- a/easybuild/easyconfigs/p/pugixml/pugixml-1.12.1-GCCcore-11.2.0.eb
+++ b/easybuild/easyconfigs/p/pugixml/pugixml-1.14-GCCcore-13.2.0.eb
@@ -1,28 +1,36 @@
 easyblock = 'CMakeMake'
 
 name = 'pugixml'
-version = '1.12.1'
+version = '1.14'
 
 homepage = 'https://pugixml.org/'
-description = """pugixml is a light-weight C++ XML processing library"""
+description = "pugixml is a light-weight C++ XML processing library"
 
-toolchain = {'name': 'GCCcore', 'version': '11.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/zeux/pugixml/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['1e28ab24b6e04e013d96f45d25e9f2d04c921dc68c613fd010ecaaad3892c14d']
+checksums = ['610f98375424b5614754a6f34a491adbddaaec074e9044577d965160ec103d2e']
 
 builddependencies = [
-    ('binutils', '2.37'),
-    ('CMake', '3.22.1')
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
-configopts = '-DBUILD_SHARED_LIBS=ON -DPUGIXML_BUILD_SHARED_AND_STATIC_LIBS=ON '
+configopts = " ".join([
+    "-DBUILD_SHARED_LIBS=ON",
+    "-DPUGIXML_BUILD_SHARED_AND_STATIC_LIBS=ON",
+])
 
 sanity_check_paths = {
-    'files': ['include/pugiconfig.hpp', 'include/pugixml.hpp', 'lib/libpugixml.a',
-              'lib/libpugixml.%s' % SHLIB_EXT, 'lib/pkgconfig/pugixml.pc'],
+    'files': [
+        'include/pugiconfig.hpp',
+        'include/pugixml.hpp',
+        'lib/libpugixml.a',
+        'lib/libpugixml.%s' % SHLIB_EXT,
+        'lib/pkgconfig/pugixml.pc'
+    ],
     'dirs': ['lib/cmake/pugixml'],
 }
 

[Flamefire]

Requires #22084 #20569 #22414 #22413 #22415
Anything else?

And 2 CI issues to fix:

• Checksums missing for one or more sources/patches of extension dolfinx in DOLFINx-0.9.0-foss-2023b.eb: found 1 sources + 0 patches vs 0 checksums
• UFL-2024.2.0-gfbf-2023b.eb:31:17: E221 multiple spaces before operator

The other 2 should be fixed with #22490

[tanmoy1989]

@Flamefire : that all looks good to me, thanks again! I had already built DOLFINx with these PRs and sent you a message over slack.

[Flamefire]

I'd use the (likely) official spelling of the name, see the authors doc page: https://jsdokken.com/dolfinx_mpc/

Might also make it easier to find having DOLFINx and DOLFINx-MPC

[moravveji]

I am interested in this PR, because I also started putting easyconfigs together for building DOLFINx for 2024a toolchain, so, I use this PR as an inspiration. For one of the dependencies, nanobind, I hardly find any easyconfig in the official repo or in this PR. Can you please also share an easyconfig for that, too?
Thanks in advance.

[Flamefire]

@moravveji All required dependencies are in PRs linked in the description. Nanobind is #22414

@tanmoy1989 We use pkconf instead if pkg-config for newer toolchains. That change seems to went missing at some point and is blocking this as the EC is missing (and likely won't be added)

[Flamefire]

Test report by @Flamefire
FAILED
Build succeeded for 15 out of 16 (16 easyconfigs in total)
i7008 - Linux Rocky Linux 8.9 (Green Obsidian), x86_64, AMD EPYC 7702 64-Core Processor (zen2), Python 3.8.17
See https://gist.github.com/Flamefire/8e87174bc9222f4480ba683673e0f914 for a full test report.

[sassy-crick]

I think there is another PR #22700 open for dolphinx, something I would require to be installed on our cluster as well. As that PR has the foss-2024a toolchain and the latest patched version of dolphinx, maybe it is a good idea to combine efforts and get both over the finishing line? :-)
As we got EasyBuild-5.0.0 out now, it might be a good idea to add any missing checksums and remove the now surplus pip commands as mentioned in the unit tests. Maybe here we also should use the latest patched version of dolphinx :-)

[sassy-crick]

Maybe change to the already merged petsc4py/3.22.5, which is currently on GitHub, so we can finish that PR?

[sassy-crick]

I missed out PETSc, sorry. We already got PETSc-3.22.5-foss-2023b.eb merged, so I would suggest to use that one. Hopefully, that will solve the merge-conflict as well.

[sassy-crick]

There are also some other PRs open for DOLPHINx most notably this one here:

• PR {tools}[foss/2023b] FEniCS v0.9.0 #23838

which has been merged. You might want to have a look what has been done there and change your PR accordingly. :-)