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pango designation v1.20

15 May 16:50
@AngieHinrichs AngieHinrichs
v1.20
5c03dbe
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pango designation v1.20

Release notes

fd7e152 - Cornelius Roemer, 2023-03-30 23:44:24 +0200 : Added lineage BN.1.3.10 (ORF1a:Q1918R, C13608T) with 40 designations
0574eba - InfrPopGen, 2023-03-31 15:13:51 +0100 : Added new lineage FK.1 from #1718 with 70 new sequence designations, and 89 updated from CH.1.1 and CH.1.1.17
1688362 - InfrPopGen, 2023-03-31 15:15:09 +0100 : Merge pull request #1831 from InfrPopGen/master
9415f0f - InfrPopGen, 2023-04-03 15:41:57 +0100 : Added new lineage BQ.1.1.73 from #1740 with 47 new sequence designations, and 3 updated from BQ.1.1
1d22dbd - InfrPopGen, 2023-04-03 15:43:04 +0100 : Merge pull request #1840 from InfrPopGen/master
d27266d - InfrPopGen, 2023-04-03 17:17:31 +0100 : Added new recombinant lineage XCA from #1752 with 41 new sequence designations, and 0 updated
6b58f62 - Cornelius Roemer, 2023-04-04 16:38:41 +0200 : Added lineage EG.2 (XBB.1.9.2 with S:478R) with 30 designations
9ac4960 - Cornelius Roemer, 2023-04-04 16:40:33 +0200 : Added lineage XBB.1.31 (S:453F and S:478R) with 17 designations
7f8ba07 - Cornelius Roemer, 2023-04-04 16:51:04 +0200 : Fix bug in designation_helper.py when there are no children
a69145a - Cornelius Roemer, 2023-04-04 16:53:58 +0200 : Added lineage XBB.1.32 (ORF1a:E148D) with 90 designations
21b1e91 - Cornelius Roemer, 2023-04-04 16:59:50 +0200 : Added lineage FL.1 (XBB.1.9.1 with S:701V) with 130 designations
57d6cb4 - Cornelius Roemer, 2023-04-04 17:12:31 +0200 : Added lineage XBB.2.3.3 (S:182N) with 30 designations
d68d647 - Cornelius Roemer, 2023-04-04 17:14:14 +0200 : Added lineage XBB.2.3.4 (S:478Q) with 30 designations
ebe33d3 - Cornelius Roemer, 2023-04-04 17:17:11 +0200 : Added lineage XBB.1.5.40 (S:478I) with 30 designations
b03e914 - Cornelius Roemer, 2023-04-04 17:59:13 +0200 : Added lineage FM.1 (BQ.1.1.53 with S:613H) with 150 designations
a53e555 - Cornelius Roemer, 2023-04-04 18:00:14 +0200 : Added lineage FM.2 (BQ.1.1.53 with S:946R) with 180 designations
55d4ad1 - Cornelius Roemer, 2023-04-04 18:25:22 +0200 : Added lineage FL.2 (XBB.1.9.1 with T4579A) with 600 designations
1270406 - InfrPopGen, 2023-04-05 19:13:56 +0100 : Added new lineage BQ.1.1.74 from #1817 with 70 new sequence designations, and 6 updated from BQ.1.1
adfca1a - InfrPopGen, 2023-04-05 19:15:50 +0100 : Merge pull request #1848 from InfrPopGen/master
c29cc87 - Cornelius Roemer, 2023-04-05 21:32:32 +0200 : Sort lineage_notes.txt correctly
b211300 - Cornelius Roemer, 2023-04-05 21:37:02 +0200 : Added lineage FN.1 (BQ.1.1.74 with S:478R) from #1817 with 70 designations
9d23043 - Cornelius Roemer, 2023-04-07 22:07:36 +0200 : Added lineage EG.1.1 (S:V70F) with 50 designations
280fd9a - Cornelius Roemer, 2023-04-07 22:18:06 +0200 : Added lineage XBB.1.28.1 (S:356T) with 50 designations
71514b7 - Cornelius Roemer, 2023-04-07 22:33:57 +0200 : Added lineage CJ.1.2 (ORF1a:L2609F) with 300 designations
c3a167d - Cornelius Roemer, 2023-04-07 22:36:21 +0200 : Added lineage CJ.1.3 (A261G reversion, G4960A, C14790T) with 300 designations
d42820b - Cornelius Roemer, 2023-04-08 15:13:24 +0200 : Added lineage XBF.1.1 (S:P621S) with 60 designations
85d749a - Cornelius Roemer, 2023-04-08 15:16:08 +0200 : Add lineage XBF.10 (S:M153I) with 16 designations
5e62d57 - InfrPopGen, 2023-04-11 11:45:14 +0100 : Added new lineage FP.1 from #1847 with 29 new sequence designations, and 0 updated
6177686 - InfrPopGen, 2023-04-11 11:46:59 +0100 : Merge pull request #1873 from InfrPopGen/master
7921837 - InfrPopGen, 2023-04-11 13:53:41 +0100 : Added new lineage BF.42 from #1855 with 30 new sequence designations, and 0 updated
7b1f1a3 - InfrPopGen, 2023-04-11 13:55:11 +0100 : Merge pull request #1874 from InfrPopGen/master
af07cc3 - InfrPopGen, 2023-04-11 16:08:46 +0100 : Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1
8b1904d - InfrPopGen, 2023-04-11 16:09:52 +0100 : Merge pull request #1875 from InfrPopGen/master
e236502 - InfrPopGen, 2023-04-12 11:34:16 +0100 : Added new lineage XBB.2.3.5 from #1846 with 5 new sequence designations, and 0 updated
67245eb - InfrPopGen, 2023-04-12 11:35:15 +0100 : Merge pull request #1880 from InfrPopGen/master
95a25bd - InfrPopGen, 2023-04-13 16:00:49 +0100 : Added new lineage FK.1.1 from #1881 with 0 new sequence designations, and 18 updated from FK.1
52e606d - InfrPopGen, 2023-04-13 16:01:52 +0100 : Merge pull request #1883 from InfrPopGen/master
2797d5f - InfrPopGen, 2023-04-14 14:24:28 +0100 : Added new recombinant lineage XCB from #1668 with 46 new sequence designations, and 0 updated
64db020 - InfrPopGen, 2023-04-14 14:26:07 +0100 : Merge pull request #1887 from InfrPopGen/master
4e851b1 - Cornelius Roemer, 2023-04-17 18:51:31 +0200 : Minor lineage notes improvements
342920d - InfrPopGen, 2023-04-17 19:33:11 +0100 : Added new lineage FQ.1 from #1797 with 40 new sequence designations, and 0 updated
a90bc6b - InfrPopGen, 2023-04-17 19:34:38 +0100 : Merge pull request #1905 from InfrPopGen/master
223d79a - InfrPopGen, 2023-04-18 14:39:54 +0100 : Added new lineage XBB.1.33 from #1879 with 18 new sequence designations, and 0 updated
7066483 - InfrPopGen, 2023-04-18 14:41:15 +0100 : Merge pull request #1912 from InfrPopGen/master
45c0707 - Cornelius Roemer, 2023-04-19 16:24:19 +0200 : Designate lineage XBL.1 (S:V635I) with 50 designations
09f25aa - Cornelius Roemer, 2023-04-19 16:31:16 +0200 : Designate lineages XBL.2 and XBL.3, add extra strains for XBL
b0f4701 - Cornelius Roemer, 2023-04-19 16:52:03 +0200 : Designate lineage XBB.2.3.6 (N:T166I) with 158 sequences
c6afc3c - Cornelius Roemer, 2023-04-19 16:59:23 +0200 : Designate lineage XBB.2.3.7 (ORF1a:T4087I) with 60 designations
7ff92cc - Cornelius Roemer, 2023-04-19 17:02:20 +0200 : Add extra XBB.2.3 to lineages.csv
99ba344 - InfrPopGen, 2023-04-20 19:46:25 +0100 : Added new lineage XBB.1.34 from #1621 with 33 new sequence designations, and 0 updated
ba825c7 - InfrPopGen, 2023-04-20 19:47:30 +0100 : Merge pull request #1926 from InfrPopGen/master
8e6f6dd - InfrPopGen, 2023-04-21 14:12:44 +0100 : Added new lineage FR.1 from #1814 with 244 new sequence designations, and 4 updated from BN.1.2.3
b5780a3 - InfrPopGen, 2023-04-21 14:14:02 +0100 : Merge pull request #1934 from InfrPopGen/master
0ab8a0b - InfrPopGen, 2023-04-21 16:08:47 +0100 : Added new lineage FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
a2da67c - InfrPopGen, 2023-04-21 16:10:14 +0100 : Merge pull request #1935 from InfrPopGen/master
d6f82ca - InfrPopGen, 2023-04-21 16:12:17 +0100 : Added missing lineages.csv updates for FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
441061d - InfrPopGen, 2023-04-21 16:14:18 +0100 : Merge pull request #1936 from InfrPopGen/master
f2fa07d - Cornelius Roemer, 2023-04-22 17:42:56 +0200 : Add recombinant XCC (CH.1.1.1/XBB.1.9.1) with 30 designations
c3a7f99 - Cornelius Roemer, 2023-04-22 18:17:57 +0200 : Designate EG.3 (XBB.1.9.2 with ORF1a:L2278F on N:L219F)
8289cb0 - Cornelius Roemer, 2023-04-22 18:20:35 +0200 : Added lineage EG.1.2 (ORF7b:H42Y) with 600 designations
0431660 - Cornelius Roemer, 2023-04-22 18:22:06 +0200 : Added lineage EG.1.3 (C3784T, A6613G) with 500 designations
a03b0dc - Cornelius Roemer, 2023-04-22 18:24:23 +0200 : Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations
242699e - Cornelius Roemer, 2023-04-22 18:32:31 +0200 : Added lineage EG.4 (XBB.1.9.2 with C28651T) with 400 designations
cd5580d - Cornelius Roemer, 2023-04-22 18:37:06 +0200 : Added lineage EG.5 (S:F456L) with 12 designations
2d736bc - Cornelius Roemer, 2023-04-22 18:46:19 +0200 : Added lineage FL.3 (XBB.1.9.1 with T1753C) with 900 designations
90a2ec2 - Cornelius Roemer, 2023-04-22 18:48:48 +0200 : Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations
721729e - Cornelius Roemer, 2023-04-22 18:53:04 +0200 : Added lineage FL.5 (XBB.1.9.1 with N:T362I) with 200 designations
416a59a - Cornelius Roemer, 2023-04-22 19:48:43 +0200 : Added lineage FK.1.2 (ORF1a:L384F, ORF1a:R550H) with 300 designations
85e7c0b - Cornelius Roemer, 2023-04-22 21:00:18 +0200 : Added lineage FT.1 (XBB.1.5.39 with S:I197V) with 300 designations
7820a81 - Cornelius Roemer, 2023-04-22 21:45:29 +0200 : Added lineage XAY.2.3 (ORF1a:A131V) with 150 designations
62fec83 - Cornelius Roemer, 2023-04-22 21:50:59 +0200 : Added lineage XAY.1.1.2 (C14838T) with 35 designations
b119264 - Cornelius Roemer, 2023-04-22 21:55:06 +0200 : Added lineage XAY.1.1.3 (C6040T, C8290T, T15153C) with 50 designations
c93a471 - Cornelius Roemer, 2023-04-22 22:39:41 +0200 : Added lineage XBB.1.16.2 (ORF3a:V13L, ORF1a:P926H) with 200 designations
b75a5d4 - Cornelius Roemer, 2023-04-22 22:42:38 +0200 : Added lineage XBB.1.16.3 (A2893C) with 60 designations
4d852e2 - Cornelius Roemer, 2023-04-22 22:47:06 +0200 : Added lineage FU.1 (XBB.1.16.1 with T3802C) with 150 designations
d0f51a1 - Cornelius Roemer, 2023-04-22 22:49:39 +0200 : Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations
ee79541 - Cornelius Roemer, 2023-04-22 23:09:51 +0200 : Added lineage XBB.1.5.41 (S:V772I, S:P521T) from #1941
81bb097 - Cornelius Roemer, 2023-04-22 23:31:31 +0200 : Added lineage XBB.1.5.42 (S:E281D) with 100 designations from #1933
befe4e2 - Cornelius Roemer, 2023-04-22 23:53:13 +0200 : Added lineage FL.2.1 (C10228T) with 200 designations
68615bb - Cornelius Roemer, 2023-04-22 23:56:39 +0200 : Added lineage FL.2.2 (S:478R) with 15 designations from #1927
b622915 - Cornelius Roemer, 2023-04-23 18:09:33 +0200 : tooling: add --keep-first option to add_to_lineages.sh
052d3f4 - Cornelius Roemer, 2023-04-23 18:10:15 +0200 : Add extra XBC.1.6 designations
6501158 - Cornelius Roemer, 2023-04-23 18:13:07 +0200 : Added lineage XBC.1.6.1 (ORF1b:N498I) with 80 designations
6b0d4fd - Cornelius Roemer, 2023-04-23 18:14:28 +0200 : Added lineage XBC.1.6.2 (ORF1a:D827N) with 35 designations
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pango designation v1.19

30 Mar 15:38
@aineniamh aineniamh
v1.19
f45cabc
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
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pango designation v1.19

Release notes

e531938 - Cornelius Roemer, Wed Mar 29 21:10:18 2023 +0200 : Added lineage FJ.1 (CH.1.1.19 with ORF1a:A1204V) with 180 designations
c78e249 - InfrPopGen, Wed Mar 29 15:42:30 2023 +0100 : Merge pull request #1818 from InfrPopGen/master
2a62dcf - InfrPopGen, Wed Mar 29 15:40:59 2023 +0100 : Added new lineage CH.1.1.22 from #1670 with 7 new sequence designations, and 9 updated from CH.1.1
f692d76 - Cornelius Roemer, Wed Mar 29 01:36:55 2023 +0200 : Added CH.1.1.21 (S:N481Y) from #1799, 50 designations
c578f47 - Cornelius Roemer, Tue Mar 28 23:30:31 2023 +0200 : fix: move "taxon,lineage" back to top
19170f5 - Angie Hinrichs, Tue Mar 28 14:19:23 2023 -0700 : #1776 was for XBB.2.3.2 not XBB.2.3, thanks @Over-There-Is, fixes #1803.
5cf9cd0 - InfrPopGen, Tue Mar 28 16:45:08 2023 +0100 : Merge pull request #1815 from InfrPopGen/master
bac15e0 - InfrPopGen, Tue Mar 28 16:42:35 2023 +0100 : Added new recombinant lineage XBZ from #1666 with 0 new sequence designations, and 238 updated designations
4a522cb - Angie Hinrichs, Mon Mar 27 11:35:36 2023 -0700 : Added 995 designations for the part of BA.5.1.15 that doesn't have C10183T (#1039). Many were previously designated BA.5.1; 20 were previously designated BA.5.1.22, 8 were BA.5.1.3 and 2 were BA.5.1.25 due to having both the defining mutations for those respective lineages and the defining mutation for BA.5.1.15 (C10790T).
385e78d - Cornelius Roemer, Mon Mar 27 04:43:37 2023 +0200 : Added lineage XBB.1.5.39 (ORF1a:M3684T) with 800 designations
37fb661 - Cornelius Roemer, Mon Mar 27 04:40:58 2023 +0200 : Added lineage FH.1 (XBB.1.5.17 with S:T883I) with 140 designations
773437b - Cornelius Roemer, Mon Mar 27 04:36:54 2023 +0200 : Added lineage XBB.1.5.38 (S:I666V, ORF1a:T403I) with 150 designations
7bfbd46 - Cornelius Roemer, Mon Mar 27 04:24:15 2023 +0200 : Added lineage FD.2 (XBB.1.5.15 with S:Q146K) from #1600 with 1000 designations
1d92447 - Cornelius Roemer, Mon Mar 27 04:21:09 2023 +0200 : Added lineage XBB.1.5.37 (S:K1045R) with 300 designations
ea6f34a - Cornelius Roemer, Fri Mar 24 21:11:20 2023 +0100 : Fix typo in lineage notes for mutation of CM.8.1.4 (thanks @FedeGueli)
411700b - Cornelius Roemer, Fri Mar 24 21:06:57 2023 +0100 : Added related issues to lineage notes, thanks @FedeGueli
1ee797a - Cornelius Roemer, Fri Mar 24 21:02:10 2023 +0100 : Add helper scripts to make designation more ergonomic
6dae4b8 - Cornelius Roemer, Fri Mar 24 20:56:54 2023 +0100 : Added lineage BF.5.5 (S:K147N) with 250 designations
0225b01 - Cornelius Roemer, Fri Mar 24 20:53:31 2023 +0100 : Added lineage XBB.2.7.1 (S:Y453F, S:K478Q, Singapore, #1725)
d6fed05 - Cornelius Roemer, Fri Mar 24 20:46:29 2023 +0100 : Added lineage XBB.2.8 (C6968T) with 250 designations
0ce4960 - Cornelius Roemer, Fri Mar 24 20:43:20 2023 +0100 : Added lineage DN.1.1.4 (S:N481S) with 70 designations
1ea0850 - Cornelius Roemer, Fri Mar 24 20:41:37 2023 +0100 : Added lineage DN.1.1.3 (S:S704L) with 100 designations
19d4246 - Cornelius Roemer, Fri Mar 24 19:26:18 2023 +0100 : Added lineage CM.8.1.4 (ORF1a:N2890D) with 86 designations
8ab5b25 - Cornelius Roemer, Fri Mar 24 19:23:35 2023 +0100 : Added lineage CM.8.1.3 (S:Y1272H) with 48 designations
e3c981f - Cornelius Roemer, Fri Mar 24 19:20:30 2023 +0100 : Added lineage CH.1.1.20 (S:T299I, S:R403K, S:D1165G) from #1736
6f71f0c - Cornelius Roemer, Fri Mar 24 19:17:22 2023 +0100 : Added lineage CH.1.1.19 (C2773) with 450 designations
0947ed6 - Cornelius Roemer, Fri Mar 24 19:15:38 2023 +0100 : Added lineage FG.3 (S:I934V) with 75 designations
1cd5d3b - Cornelius Roemer, Fri Mar 24 19:14:29 2023 +0100 : Added lineage FG.2 (S:D178N) with 80 designations
a8a99b5 - Cornelius Roemer, Fri Mar 24 19:12:58 2023 +0100 : Added lineage FG.1 (XBB.1.5.16.1 with S:T284I, S:R403K, S:L513F) from #1751
fb4e8b2 - Cornelius Roemer, Fri Mar 24 19:09:27 2023 +0100 : Added lineage XBF.9 (ORF1b:S1003G) with 90 designations
3dd84ab - Cornelius Roemer, Fri Mar 24 19:06:08 2023 +0100 : Added lineage BQ.1.26.2 (S:F157L) with 90 designations
73062bf - Cornelius Roemer, Fri Mar 24 19:01:46 2023 +0100 : Added lineage BL.1.5 (S:A475V) with 120 designations
fa0fb80 - Cornelius Roemer, Fri Mar 24 18:56:09 2023 +0100 : Added lineage XBB.1.5.36 (C9442T) with 240 designations
2a3dec1 - Cornelius Roemer, Fri Mar 24 18:53:47 2023 +0100 : Added lineage XBB.1.5.35 (S:N978S, USA, from #1699) with 400 designations
8032c82 - Cornelius Roemer, Fri Mar 24 18:46:07 2023 +0100 : Added lineage XBB.1.30 (ORF1b:K2557R) with 150 designations
086bc4f - Cornelius Roemer, Fri Mar 24 18:39:38 2023 +0100 : Added lineage XBB.1.5.34 (ORF1a:T1754I) with 430 designations
94ecd67 - Cornelius Roemer, Fri Mar 24 18:36:59 2023 +0100 : Added lineage XBB.1.29 (ORF1a:L3829F, S:A292S) with 50 designations
5fdd9b0 - Cornelius Roemer, Fri Mar 24 18:33:34 2023 +0100 : Added lineage XBB.1.28 (S:R403K) with 13 designations
884b1f7 - Cornelius Roemer, Fri Mar 24 18:02:06 2023 +0100 : Added lineage CH.1.1.18 (S:K187T) with 150 designations, from #1747
4267069 - Cornelius Roemer, Fri Mar 24 17:58:40 2023 +0100 : Added lineage XBB.2.3 (S:G184V, ORF1a:R2159W) with 50 designations from #1776
c49a12a - Cornelius Roemer, Fri Mar 24 17:57:05 2023 +0100 : Added lineage XBB.2.3.1 (S:D80Y) with 80 designations
b4fb9dd - Cornelius Roemer, Fri Mar 24 17:52:32 2023 +0100 : Added lineages XBB.1.5.31, XBB.1.5.32, XBB.1.5.33
cdcebd4 - Cornelius Roemer, Thu Mar 23 23:42:16 2023 +0100 : Added lineage BN.1.3.9 (S:V83F) with 70 designations
d39dc6f - InfrPopGen, Thu Mar 23 19:22:10 2023 +0000 : Merge pull request #1793 from InfrPopGen/master
7b26841 - InfrPopGen, Thu Mar 23 19:20:43 2023 +0000 : Added new lineage CP.8.1 from #1627 with 0 new sequence designations, and 17 updated from CP.8, and 15 from BA.5.2.6
367c6fb - Cornelius Roemer, Thu Mar 23 18:06:49 2023 +0100 : feat: remove non-GISAID strainnames in deduplicate scripts
034686c - Angie Hinrichs, Wed Mar 22 15:41:25 2023 -0700 : Removed a few more INSDC accessions, all have COG-UK names already in lineages.csv.
10404d2 - Angie Hinrichs, Wed Mar 22 15:29:14 2023 -0700 : Replaced INSDC accessions with names, resolved duplicates. Also removed non-sequence-name "strain".
c0aa9f5 - InfrPopGen, Wed Mar 22 16:13:11 2023 +0000 : Merge pull request #1788 from InfrPopGen/master
f662df7 - InfrPopGen, Wed Mar 22 16:11:44 2023 +0000 : Added new lineage FF.1 from #1523 with 65 new sequence designations, and 0 updated
a354100 - Cornelius Roemer, Wed Mar 22 01:37:41 2023 +0100 : Added lineage XBB.1.5.30 (S:A348T) with 250 designations
1558fa9 - Cornelius Roemer, Wed Mar 22 01:35:08 2023 +0100 : Added lineage XBB.1.5.29 (S:A348V) with 25 designations
ae4a881 - Cornelius Roemer, Wed Mar 22 01:31:23 2023 +0100 : Added lineage FE.1 (XBB.1.18.1 with S:F456L) with 10 designations
9c8e360 - Cornelius Roemer, Wed Mar 22 01:21:33 2023 +0100 : Added lineage FD.1.1 (S:F456L) with 50 designations
eb0ca1d - Cornelius Roemer, Wed Mar 22 01:19:30 2023 +0100 : Added lineage FD.1 (XBB.1.5.15 with ORF7b:E3*) with 150 designations
2961a14 - Cornelius Roemer, Wed Mar 22 01:09:37 2023 +0100 : Added lineage FC.1 (BQ.1.1.72 with S:478R) with 80 designations
70571ac - Cornelius Roemer, Wed Mar 22 01:06:37 2023 +0100 : Added lineage BQ.1.1.72 (ORF1b:D100A) with 700 designations
c1c65a2 - Cornelius Roemer, Wed Mar 22 01:03:59 2023 +0100 : Added lineage FB.2 (S:478R) with 70 designations
80d74a9 - Cornelius Roemer, Wed Mar 22 01:02:25 2023 +0100 : Added lineage FB.1 (BQ.1.2.1 with S:D253G) with 25 designations
fbe7ed4 - Cornelius Roemer, Wed Mar 22 00:57:49 2023 +0100 : Added lineage DR.2 (BQ.1.1.3 with S:478R) with 70 designations
ff7b395 - Cornelius Roemer, Wed Mar 22 00:54:41 2023 +0100 : Added lineage FA.2 (BQ.1.1.10 with S:T323I) with 100 designations
92524ad - Cornelius Roemer, Wed Mar 22 00:53:35 2023 +0100 : Added lineage FA.1 (BQ.1.1.10 with S:478R) with 100 designations
115a58a - Cornelius Roemer, Wed Mar 22 00:49:51 2023 +0100 : Added lineage BE.13 (S:346T, S:478R) with 110 designations
df35dea - Cornelius Roemer, Wed Mar 22 00:46:41 2023 +0100 : Added lineage BE.12 (C10834T, T18975C, A29359G) with 300 designations
cc043ad - Cornelius Roemer, Wed Mar 22 00:42:03 2023 +0100 : Added lineage BE.11 (T3049C) with 1000 designations
af92f39 - Cornelius Roemer, Wed Mar 22 00:19:03 2023 +0100 : Added lineage XBB.1.5.28 (S:478R on 17124C polytomy) with 50 designations
29a8c5e - Cornelius Roemer, Wed Mar 22 00:15:20 2023 +0100 : Added lineage EK.2.1 (S:478R) with 35 designations
cb29522 - Cornelius Roemer, Wed Mar 22 00:13:29 2023 +0100 : Added lineage EK.3 (S:P251S) with 130 designations
32848ee - Cornelius Roemer, Wed Mar 22 00:09:05 2023 +0100 : Added lineage XBB.1.5.27 (S:K478R) with 60 designations
39015b3 - Cornelius Roemer, Wed Mar 22 00:06:10 2023 +0100 : Added lineage XBB.1.16.1 (S:T547I) with 60 designations
3ba50f5 - Cornelius Roemer, Wed Mar 22 00:04:09 2023 +0100 : Added lineage XBB.1.27 (S:478R, S:A890V) with 20 designations
42f97a9 - Cornelius Roemer, Tue Mar 21 23:54:35 2023 +0100 : Added lineage EZ.1 (BQ.1.1.43 with S:S247N, S:Y248S) with 50 designations
764d273 - Cornelius Roemer, Tue Mar 21 23:50:56 2023 +0100 : Added lineage EY.1 (EF.1.1.1 with S:Q613H) with 150 designations
911be60 - Cornelius Roemer, Tue Mar 21 23:42:28 2023 +0100 : Added lineage EW.3 (S:A348S) with 50 designations
c433f46 - Cornelius Roemer, Tue Mar 21 23:40:10 2023 +0100 : Added lineage EW.2 (S:A701V) with 200 designations
49a6cbb - Cornelius Roemer, Tue Mar 21 23:38:17 2023 +0100 : Added lineage EW.1 (BQ.1.1.38 with S:478R) with 80 designations
bd69c9c - Cornelius Roemer, Tue Mar 21 23:34:53 2023 +0100 : Added lineage EV.1 (BQ.1.1.71 with S:248H) with 15 designations
6419f4a - Angie Hinrichs, Mon Mar 20 15:45:07 2023 -0700 : Removing incomplete sequence name.
f19893e - Angie Hinrichs, Mon Mar 20 15:15:28 2023 -0700 : Updating some names that ha...

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ciscorucinski, Over-There-Is, and FedeGueli
Assets 2
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pango designation v1.18.1

14 Feb 16:13
@aineniamh aineniamh
v1.18.1
beeaac8
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pango designation v1.18.1

e22f5df - InfrPopGen, Tue Feb 14 15:43:08 2023 +0000 : Merge pull request #1657 from InfrPopGen/master
4008ec0 - InfrPopGen, Tue Feb 14 15:42:02 2023 +0000 : Added new lineage BA.5.2.63 from #1636 with 111 new sequence designations, and 0 updated
36a888f - Cornelius Roemer, Mon Feb 13 18:32:41 2023 +0100 : Withdraw BF.7.25 due to being defined by pangolin masked site
96691b9 - Cornelius Roemer, Mon Feb 13 18:09:25 2023 +0100 : Improved notes
69f1d2d - Cornelius Roemer, Mon Feb 13 13:41:41 2023 +0100 : Fix typos in lineage notes, thanks @DoropFan
02021bd - Josh Levy, Sun Feb 12 09:04:43 2023 -0800 : EB has incorrect alias (#1649)
cb2e940 - Cornelius Roemer, Sun Feb 12 14:28:21 2023 +0100 : Added lineages EE.5, EF.1 (BQ.1.1.13.1), EF.1.1, EF.1.1.1, EF.1.2, EF.1.3, EF.2
8b0a890 - Cornelius Roemer, Sun Feb 12 14:12:46 2023 +0100 : Added lineage EE.4 (S:Q52H) with 150 designations
fbed65c - Cornelius Roemer, Sun Feb 12 14:10:37 2023 +0100 : Added lineage BQ.1.1.4 with 500 designations
3974265 - Cornelius Roemer, Sun Feb 12 14:08:56 2023 +0100 : Added lineage EE.2 (ORF1b:V1538I) with 700 designations
55c6219 - Cornelius Roemer, Sun Feb 12 14:07:06 2023 +0100 : Added lineage EE.1 (N:T366I) with 800 designations
da0fbbd - Cornelius Roemer, Sun Feb 12 14:04:52 2023 +0100 : Added lineage ED.3 (S:D843N) with 120 designations
bb7eae7 - Cornelius Roemer, Sun Feb 12 14:02:17 2023 +0100 : Added lineage ED.2 (ORF1a:D928Y) with 700 designations
60a026d - Cornelius Roemer, Sun Feb 12 14:00:35 2023 +0100 : Added lineage ED.1 with 2000 (ORF3a:L108F, ORF1a:C433S) designations
96e9d5f - Cornelius Roemer, Sun Feb 12 02:37:39 2023 +0100 : Add defining mutation of BQ.1.1.52 to lineage notes
01d34e6 - Cornelius Roemer, Sun Feb 12 02:23:27 2023 +0100 : Added lineages BF.7.19.1 and BF.7.26 and fixed bug in lineages.csv
e4a3431 - Cornelius Roemer, Sun Feb 12 01:58:43 2023 +0100 : Added lineage BF.7.25 with 500 designations
75b9a21 - Cornelius Roemer, Sun Feb 12 01:56:34 2023 +0100 : Added lineage BF.7.24 with 1500 designations
6e7df40 - Cornelius Roemer, Sun Feb 12 01:54:03 2023 +0100 : Added lineage BF.7.23 (ORF1b:T239I) with 1000 designations
856e75a - Cornelius Roemer, Sun Feb 12 01:52:01 2023 +0100 : Added lineage BF.7.22 (ORF8:V81I) with 1500 designations
b5a8e51 - Cornelius Roemer, Sun Feb 12 01:49:35 2023 +0100 : Added lineage BF.7.21 with 2000 designations
88cb887 - Cornelius Roemer, Sun Feb 12 01:47:38 2023 +0100 : Added lineage BF.7.20 with 2000 designations
5d625e2 - Cornelius Roemer, Sun Feb 12 01:45:51 2023 +0100 : Added lineage BF.7.19 (ORF7a:R118S) with 1700 designations
02161a1 - Cornelius Roemer, Sun Feb 12 01:16:58 2023 +0100 : Added lineage BA.5.2.62 (S:A653V) with 300 designations
a56a2c1 - Cornelius Roemer, Sun Feb 12 01:05:01 2023 +0100 : Added lineage BA.5.2.61 (S:N450D) with 150 designations
74b20fe - Cornelius Roemer, Sun Feb 12 01:02:22 2023 +0100 : Added lineage BZ.2 (BA.5.2.3 with S:N450D) with 150 designations
f8bc66a - Cornelius Roemer, Sun Feb 12 00:56:23 2023 +0100 : Added lineage BA.5.2.60 (S:N450D) with 300 designations
1a27750 - Cornelius Roemer, Sun Feb 12 00:51:03 2023 +0100 : Added extra BA.5.2.32 designations
30772e4 - Cornelius Roemer, Sun Feb 12 00:47:44 2023 +0100 : Reselected BA.5.2.52 strains as there was a potential bug in them
0266194 - Cornelius Roemer, Sun Feb 12 00:05:18 2023 +0100 : Add issues to lineages
0217088 - Cornelius Roemer, Sat Feb 11 19:12:04 2023 +0100 : Added lineage CZ.2 (BQ.1.1.1.2, S:A688V) with 400 designations
034a603 - Cornelius Roemer, Sat Feb 11 19:08:42 2023 +0100 : Added lineages BQ.1.1.69 (ORF1b:S2027L) and BQ.1.1.70 (ORF1a:A903V, M:S212G)
3f422d7 - Cornelius Roemer, Sat Feb 11 19:04:57 2023 +0100 : Added lineage BQ.1.1.68 and DT.3 (BQ.1.1.32 with S:L176F)
8c6f04c - Cornelius Roemer, Sat Feb 11 19:00:21 2023 +0100 : Added lineage BQ.1.1.67 (S:L176F) with 700 designations
8bd01d1 - Cornelius Roemer, Sat Feb 11 18:54:07 2023 +0100 : Added lineage BQ.1.1.66 (S:K147N) with 100 designations
08f564a - Cornelius Roemer, Sat Feb 11 18:50:09 2023 +0100 : Added lineages BQ.1.1.64 (S:F186S) and BQ.1.1.65 (S:K147I)
4305e5f - Cornelius Roemer, Sat Feb 11 18:39:16 2023 +0100 : Added lineage BQ.1.1.63 (S:Y248H) with 250 designations
7834d48 - Cornelius Roemer, Sat Feb 11 18:34:54 2023 +0100 : Added lineages BQ.1.1.61 (S:P621H) and BQ.1.1.62 (S:P621S)
ced8155 - Cornelius Roemer, Sat Feb 11 18:30:47 2023 +0100 : Added lineages BQ.1.1.58 (S:I934V), BQ.1.1.59 (S:T732I) and BQ.1.1.60 (S:S691F)
d502042 - Cornelius Roemer, Sat Feb 11 18:20:11 2023 +0100 : Added lineages BQ.1.1.56 (S:H1101Y) and BQ.1.1.57 (S:S256A)
46e57d1 - Cornelius Roemer, Sat Feb 11 18:16:34 2023 +0100 : Added lineages BQ.1.1.54 (S:F186S, N:A211T) and BQ.1.1.55 (S:K1149R)
9590884 - Cornelius Roemer, Sat Feb 11 18:06:30 2023 +0100 : Added lineage BQ.1.1.53 (S:N185D) with 280 designations
a588301 - Cornelius Roemer, Sat Feb 11 18:00:51 2023 +0100 : Addedl lineage BQ.1.10.3 (S:K147E) with 100 designations
5388f08 - Cornelius Roemer, Sat Feb 11 17:58:02 2023 +0100 : Added lineage BQ.1.31 (S:K147E) with 300 designations
638d7d3 - Cornelius Roemer, Sat Feb 11 17:52:51 2023 +0100 : Added lineages BQ.1.30 (S:V445A), EC.1 (BQ.1.10.1 with S:Q613H) and EC.1.1 (S:V445A)
c1a359b - Cornelius Roemer, Sat Feb 11 17:09:27 2023 +0100 : Added lineages BA.5.2.58 (S:R346S on branch) and BA.5.2.59 (S:V1264L)
b51a617 - Cornelius Roemer, Sat Feb 11 17:04:11 2023 +0100 : Added lineage BA.5.2.57 (S:R346S) with 1400 designations
44b29c2 - Cornelius Roemer, Sat Feb 11 16:59:06 2023 +0100 : Added lineages BA.5.2.53 (S:A653V), BA.5.2.54 (S:N450D), BA.5.2.55, BA.5.2.56 (S:K444M)
8e63ff9 - Cornelius Roemer, Sat Feb 11 16:40:08 2023 +0100 : Added lineages BA.5.2.51 (S:K444R) and BA.5.2.52 (S:N450D)
3e600c1 - Cornelius Roemer, Sat Feb 11 16:34:07 2023 +0100 : Added extra designations for BA.5.2.50
f8d3387 - Cornelius Roemer, Sat Feb 11 16:29:54 2023 +0100 : Added lineages BF.41 (ORF7b:A43V) and BF.41.1 (S:R346T)
fd9b853 - Cornelius Roemer, Sat Feb 11 16:24:47 2023 +0100 : Added lineage BF.40 (S:V445A) with 200 designations
87e883b - Cornelius Roemer, Sat Feb 11 16:21:36 2023 +0100 : Added lineages BF.39 (S:G181V) and BF.39.1 (S:V445A, S:N450D)
c0130b5 - Cornelius Roemer, Sat Feb 11 16:15:56 2023 +0100 : Added lineages BF.38, BF.38.1(S:Q1201K), BF.38.2 (S:V445A), BF.38.3 (S:P1162S)
769c65b - Cornelius Roemer, Sat Feb 11 16:07:26 2023 +0100 : Added lineage BF.37 (ORF1a:S994L, S:G446D) with 300 designations
a664764 - Cornelius Roemer, Sat Feb 11 16:03:08 2023 +0100 : Added lineage BF.36 (ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V) with 2000 designations
1353f2f - Cornelius Roemer, Sat Feb 11 15:49:42 2023 +0100 : Added lineage BF.35 (S:N450D) with 130 designations
3a31d63 - Cornelius Roemer, Sat Feb 11 15:46:25 2023 +0100 : Added lineages BF.7.17 (S:A688V, S:G1167S) and BF.7.18 (S:K97N)
e55f0c3 - Cornelius Roemer, Sat Feb 11 15:39:01 2023 +0100 : Added lineages BF.7.16 (ORF1a:A498V) and BF.7.16.1 (S:A688V)
da048f5 - Cornelius Roemer, Sat Feb 11 15:14:59 2023 +0100 : Added lineages BA.5.1.36 (S:R346T & S:G261V) and BA.5.1.37 (S:R346T & S:Y248N)
f42fbf1 - Cornelius Roemer, Sat Feb 11 14:44:06 2023 +0100 : Added lineages BA.5.1.35 (ORF1a:I1525M) and EB.1 (BA.5.1.35 with S:R346T)
0f855a4 - Cornelius Roemer, Sat Feb 11 14:35:35 2023 +0100 : Added lineage BA.5.1.34 (S:P1162S) with 1400 designations
b500c69 - Cornelius Roemer, Sat Feb 11 14:32:19 2023 +0100 : Added lineage BA.5.1.33 (S:V1264L) with 1000 designations
3a42a0a - Cornelius Roemer, Sat Feb 11 14:27:05 2023 +0100 : Added lineages CL.1.1 (S:P1162L), CL.1.2 (S:T883I) and CL.1.3 (S:S71F)
c3b75ce - Cornelius Roemer, Sat Feb 11 02:35:25 2023 +0100 : Added lineage BQ.1.10.2 (S:T523N) with 250 designations
b726213 - Cornelius Roemer, Sat Feb 11 02:20:19 2023 +0100 : Added lineages EA.1 (ORF8:C102F/ins_S:247:SKWL) and EA.2 (S:T470I)
68b7875 - Cornelius Roemer, Sat Feb 11 02:16:02 2023 +0100 : Added lineage BQ.1.1.52 with 1000 designations
e16b4b9 - Cornelius Roemer, Sat Feb 11 02:06:15 2023 +0100 : Added lineage BQ.1.15.1 and BQ.1.15.2 (both with ins_S:247:SKWL)
504a2be - Cornelius Roemer, Sat Feb 11 01:57:00 2023 +0100 : Added lineage BQ.1.29 (S:E554Q) with 70 designations
e559fb0 - Cornelius Roemer, Sat Feb 11 01:39:49 2023 +0100 : Added lineages BW.1.1.1 (ORF1a:L864F) and BW.1.1.2 (ORF1b:P1101S)
80d36bc - Cornelius Roemer, Sat Feb 11 01:17:24 2023 +0100 : Added lineage XAY.1.1.1 (S:D1153Y) from #1569 with 20 designations
1dcf0fe - Cornelius Roemer, Sat Feb 11 01:08:56 2023 +0100 : Added lineages XAY.2.1 (N:T24A) and XAY.2.2 (ORF1a:N447S)
d3a59d8 - Cornelius Roemer, Sat Feb 11 00:53:31 2023 +0100 : Added lineage XBC.1.4 (S:G184S) with 30 designations
045fbf4 - Cornelius Roemer, Sat Feb 11 00:51:57 2023 +0100 : Added lineage XBC.1.3 with 80 designations
6bf3629 - Cornelius Roemer, Sat Feb 11 00:24:39 2023 +0100 : Added lineages XBF.2 (ORF8:V62A) and XBF.3 (ORF1a:V274I)
c14ed8f - Cornelius Roemer, Sat Feb 11 00:07:44 2023 +0100 : Added lineage XBF.1 (S:S939F) with 30 designations
0cfc348 - Cornelius Roemer, Fri Feb 10 23:49:14 2023 +0100 : Added lineage BQ.1.1.51 (ORF3a:L101F) with 1000 designations
c30d608 - Cornelius Roemer, Fri Feb 10 23:42:22 2023 +0100 : Added lineage XBB.1.14 (S:G75V, S:E554K) with 30 designations
05bd633 - Cornelius Roemer, Fri Feb 10 23:36:50 2023 +0100 : Added lineage BF.5.4 (ORF1a:K3839R) with 1700 designations
0456a36 - InfrPopGen, Fri Feb 10 15:01:04 2023 +0000 : Merge pull request #1645 from InfrPopGen/master
f261970 - InfrPopGen, Fri Feb 10 14:59:50 2023 +0000 : Added new lineage BQ.1.1.50 from #1577 with 39 new sequence designations, and 0 updated
649f695 - Cornelius Roemer, Fri Feb 10 14:10:26 2023 +0100 : Added lineage XBB.1.13 (S:S490P) with 80 designations from #1487
7c58a3c - Cornelius Roemer, Fri Feb 10 14:04:43 2023 +0100 : Added lineage XBB.1.5.10 (S:F456L) with 50 designations from #1614
...

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DoropFan
Assets 2
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pango designations v1.18

09 Jan 09:23
@aineniamh aineniamh
v1.18
2df7692
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
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pango designations v1.18

Release notes

cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 13...

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PeterSlickers
Assets 2
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pango designations v1.17

05 Dec 11:46
@aineniamh aineniamh
v1.17
42db19e
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pango designations v1.17

Notes

lineage designation date
BQ.1.22 2022-11-02
BF.7.4.2 2022-11-02
CP.1.2 2022-11-02
CP.1.3 2022-11-02
CP.2 2022-11-02
CP.3 2022-11-02
CP.4 2022-11-02
CP.5 2022-11-02
CP.6 2022-11-02
CR.1.1 2022-11-02
BS.1.2 2022-11-02
CM.5.1 2022-11-02
BL.5 2022-11-02
XAY.1.1 2022-11-03
BQ.1.1.20 2022-11-03
BQ.1.1.21 2022-11-03
BQ.1.1.22 2022-11-03
CZ.1 2022-11-03
XBB.4.1 2022-11-03
BQ.1.23 2022-11-03
BA.5.2.38 2022-11-03
DA.1 2022-11-03
BF.7.13 2022-11-03
BF.7.13.1 2022-11-03
BF.7.13.2 2022-11-03
XBF 2022-11-03
CA.3.1 2022-11-03
CM.7 2022-11-04
BA.5.2.39 2022-11-04
DB.1 2022-11-04
BF.33 2022-11-04
BA.4.6.5 2022-11-04
DC.1 2022-11-04
BQ.1.1.23 2022-11-04
BQ.1.1.24 2022-11-04
DD.1 2022-11-04
BE.6 2022-11-04
BE.7 2022-11-04
BE.8 2022-11-04
BA.5.11 2022-11-04
DB.2 2022-11-04
BQ.1.24 2022-11-04
BA.5.2.40 2022-11-04
BQ.1.25 2022-11-05
CQ.1.1 2022-11-05
CR.1.2 2022-11-05
DE.1 2022-11-05
DE.2 2022-11-05
CM.8 2022-11-05
DF.1 2022-11-06
XBB.1.4 2022-11-06
BF.34 2022-11-08
XBB.1.5 2022-11-08
DG.1 2022-11-09
DH.1 2022-11-09
BR.2.1 2022-11-09
BN.1.7 2022-11-10
CM.8.1 2022-11-10
CM.9 2022-11-10
CM.6.1 2022-11-10
BE.9 2022-11-12
BQ.1.26 2022-11-12
BF.7.5.1 2022-11-13
BA.5.2.41 2022-11-13
CK.3 2022-11-14
XBG 2022-11-14
BA.5.1.31 2022-11-15
XBH 2022-11-16
BW.1.1 2022-11-20
BN.1.8 2022-11-22
BQ.1.1.25 2022-11-22
CM.2.1 2022-11-22
DJ.1 2022-11-23
DJ.1.1 2022-11-23
BA.5.2.42 2022-11-23
XBB.1.4.1 2022-11-25
BA.5.2.43 2022-11-26
BN.1.9 2022-11-28
CH.1.1.1 2022-11-29
CH.1.1.2 2022-11-29
BA.5.2.44 2022-11-29
DK.1 2022-11-30
BQ.1.1.26 2022-12-01
XBJ 2022-12-01
CH.3 2022-12-01
BQ.1.1.27 2022-12-02
DL.1 2022-12-03
BA.5.2.45 2022-12-03
BQ.1.1.28 2022-12-04
BQ.1.26.1 2022-12-04
Commits

6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - rquiroga7, Fri Dec 2 11:48:37 2022 -0300 : Update BQ.1.1.25 mutations
f3ef169 - Cornelius Roemer, Thu Dec 1 19:03:33 2022 +0100 : Added lineage CH.3 (S:486P) from #1375 with 14 designations
d37a34d - Cornelius Roemer, Thu Dec 1 18:34:29 2022 +0100 : Added recombinant XBJ (BA.2.3.20/BA.5.2) with 23 designations from #1268
947e598 - Cornelius Roemer, Thu Dec 1 18:14:35 2022 +0100 : Added lineage BQ.1.1.26 (S:E471Q) with 20 designations
9a9e0ef - Cornelius Roemer, Wed Nov 30 23:40:09 2022 +0100 : Added 20 extra designated sequences for BQ.1.1.25
fa14664 - Cornelius Roemer, Wed Nov 30 23:38:35 2022 +0100 : Added lineage DK.1 (BQ.1.1.7.1, S:339N) with 10 designations
dcb449a - Cornelius Roemer, Tue Nov 29 17:47:30 2022 +0100 : Added lineage BA.5.2.44 (ORF1a:L2564F) with 900 designations
f01bae3 - Cornelius Roemer, Tue Nov 29 17:17:14 2022 +0100 : Added lineages CH.1.1.1 (S:N185D) and CH.1.1.2 (S:T883I) with 50/20 designations
71a5573 - InfrPopGen, Mon Nov 28 15:13:34 2022 +0000 : Merge pull request #1373 from InfrPopGen/master
35579c0 - InfrPopGen, Mon Nov 28 15:11:49 2022 +0000 : Added new lineage BN.1.9 from #1327 with 24 new sequence designations, and 0 updated
91d5b04 - InfrPopGen, Sat Nov 26 16:13:57 2022 +0000 : Merge pull request #1371 from InfrPopGen/master
5c20270 - InfrPopGen, Sat Nov 26 16:12:20 2022 +0000 : Added new lineage BA.5.2.43 from #1312 with 31 new sequence designations, and 0 updated designations
4c6a85b - InfrPopGen, Fri Nov 25 16:46:09 2022 +0000 : Merge pull request #1368 from InfrPopGen/master
2bb9531 - InfrPopGen, Fri Nov 25 16:44:46 2022 +0000 : Added new lineage XBB.1.4.1 from #1352 with 8 new sequence designations, and 3 updated designations from XBB.1.4
fb90126 - InfrPopGen, Wed Nov 23 20:28:34 2022 +0000 : Merge pull request #1365 from InfrPopGen/master
1f8b3b0 - InfrPopGen, Wed Nov 23 20:27:10 2022 +0000 : Added new lineage BA.5.2.42 from #1266 with 50 new sequence designations, and 0 updated designations
9dddb82 - InfrPopGen, Wed Nov 23 16:21:53 2022 +0000 : Merge pull request #1364 from InfrPopGen/master
d0dbb33 - InfrPopGen, Wed Nov 23 16:20:24 2022 +0000 : Added new lineage DJ.1.1 from #1245 with 0 new sequence designations, and 17 updated designations from DJ.1
2bef77b - InfrPopGen, Wed Nov 23 16:00:02 2022 +0000 : Merge pull request #1363 from InfrPopGen/master
89c833a - InfrPopGen, Wed Nov 23 15:57:39 2022 +0000 : Added new recombinant lineage DJ.1 from #1245 with 87 new sequence designations, and 61 updated designations from BA.5.1.25
11b0915 - Cornelius Roemer, Tue Nov 22 17:44:26 2022 +0100 : Linked BW.1.1 (S:V486A) to #1341 in lineage notes
c081af4 - Cornelius Roemer, Tue Nov 22 17:40:14 2022 +0100 : Added lineage CM.2.1 (S:F486S) from issue #1356 with 7 designations
188716e - Cornelius Roemer, Tue Nov 22 16:54:19 2022 +0100 : Added lineage BQ.1.1.25 (S:F490S) with 22 designations
9fd95c8 - Cornelius Roemer, Tue Nov 22 16:47:42 2022 +0100 : Added lineage BN.1.8 (S:A475V) with 11 designations
4374c80 - Cornelius Roemer, Sun Nov 20 19:27:38 2022 +0100 : Added lineage BW.1.1 (S:F486S) with 25 designations
ceef3f2 - InfrPopGen, Wed Nov 16 17:31:46 2022 +0000 : Merge pull request #1346 from InfrPopGen/master
6da3030 - InfrPopGen, Wed Nov 16 17:30:02 2022 +0000 : Added new recombinant lineage XBH from #1229 with 36 new sequence designations, and 0 updated designations
5a35d87 - InfrPopGen, Tue Nov 15 15:01:01 2022 +0000 : Merge pull request #1344 from InfrPopGen/master
1eeb05e - InfrPopGen, Tue Nov 15 14:59:39 2022 +0000 : Added new lineage BA.5.1.31 from #991 with 31 new sequence designations, and 1 updated designations from BA.5.1
04e9326 - Cornelius Roemer, Tue Nov 15 00:07:48 2022 +0100 : fix: Use monophyletic BA.5.2.41 designations from Usher tree
9a02ce3 - InfrPopGen, Mon Nov 14 17:34:50 2022 +0000 : Merge pull request #1338 from InfrPopGen/master
4941af7 - InfrPopGen, Mon Nov 14 17:32:32 2022 +0000 : Added new recombinant lineage XBG from #896 with 14 new sequence designations, and 0 updated designations
b336776 - InfrPopGen, Mon Nov 14 16:11:44 2022 +0000 : Merge pull request #1337 from InfrPopGen/master
504be11 - InfrPopGen, Mon Nov 14 16:09:56 2022 +0000 : Added new lineage CK.3 from #1121 with 76 new sequence designations, and 15 updated designations from CK.1
b3301b5 - InfrPopGen, Sun Nov 13 14:54:51 2022 +0000 : Merge pull request #1331 from InfrPopGen/master
41a7f39 - InfrPopGen, Sun Nov 13 14:53:32 2022 +0000 : Added new lineage BA.5.2.41 from #1328 with 30 new sequence designations, and 0 updated designations
005b1e7 - InfrPopGen, Sun Nov 13 13:01:16 2022 +0000 : Merge pull request #1329 from InfrPopGen/master
073a80e - InfrPopGen, Sun Nov 13 13:00:12 2022 +0000 : Added new lineage BF.7.5.1 from #1317 with 17 new sequence designations, and 5 updated designations from BF.7.5
41d3aec - InfrPopGen, Sat Nov 12 17:01:17 2022 +0000 : Merge pull request #1323 from InfrPopGen/master
97c2640 - InfrPopGen, Sat Nov 12 16:59:30 2022 +0000 : Added new lineage BQ.1.26 from #1315 with 15 new sequence designations, and 0 updated designations
78d95ee - InfrPopGen, Sat Nov 12 15:09:08 2022 +0000 : Merge pull request #1322 from InfrPopGen/master
0ae1ea8 - InfrPopGen, Sat Nov 12 15:07:30 2022 +0000 : Added new lineage BE.9 from #1302 with 233 new sequence designations, and 0 updated designations
c18407f - Cornelius Roemer, Thu Nov 10 15:11:36 2022 +0100 : Added lineage CM.6.1 (S:A348S) with 6 designations
606b44e - Cornelius Roemer, Thu Nov 10 15:09:37 2022 +0100 : Added lineage CM.9 (S:S256L) with 20 designations, added extra CM.6 designations
(piranha) [11:43:51] ~/repositories/pango-designation % git log --pretty=format:"%h - %an, %ad : %s"
42db19e - Áine O'Toole, Mon Dec 5 11:34:14 2022 +0000 : Update init.py
6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - ...

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Contributors

PeterSlickers and Sam8138
Assets 2
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pango designations v1.16

02 Nov 11:17
@aineniamh aineniamh
v1.16
8374248
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pango designations v1.16

What's changed:

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Assets 2
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v1.15.1

04 Oct 12:40
@corneliusroemer corneliusroemer
v1.15.1
6640525
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
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v1.15.1

Bump __init__.py version string correctly

Assets 2
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v1.15

03 Oct 14:09
@corneliusroemer corneliusroemer
v1.15
ae71dd3
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v1.15

New lineages with designation date

lineage designation date
BA.5.10 2022-08-18
BA.5.1.11 2022-08-18
XAR 2022-08-18
BA.2.75.2 2022-08-19
BA.2.76.2 2022-08-19
BA.5.2.6 2022-08-21
BA.2.75.3 2022-08-21
BA.5.2.7 2022-08-21
BF.15 2022-08-21
BA.4.8 2022-08-21
BA.2.75.4 2022-08-21
BL.1 2022-08-21
BA.5.1.12 2022-08-22
XAS 2022-08-22
BA.5.1.13 2022-08-22
BA.2.75.5 2022-08-22
XAT 2022-08-22
BA.5.1.14 2022-08-22
XAU 2022-08-23
XAV 2022-08-23
BF.16 2022-08-23
BE.1.1.1 2022-08-24
XAW 2022-08-25
XAY 2022-08-25
BE.1.3 2022-08-26
BA.5.2.8 2022-08-26
BA.5.1.15 2022-08-26
BA.5.1.16 2022-08-26
BA.5.1.17 2022-08-26
BA.5.2.9 2022-08-26
BA.5.2.10 2022-08-26
BA.5.2.11 2022-08-26
BA.5.2.12 2022-08-26
BF.17 2022-08-26
BF.18 2022-08-26
BF.19 2022-08-26
BF.20 2022-08-26
BF.21 2022-08-26
XAZ 2022-08-27
BA.4.1.9 2022-08-27
BA.5.1.18 2022-08-28
BA.5.5.2 2022-08-29
BM.1 2022-08-30
BF.22 2022-08-31
BA.2.3.20 2022-09-02
BN.1 2022-09-02
BP.1 2022-09-02
BA.5.5.3 2022-09-02
BQ.1 2022-09-02
BN.2 2022-09-03
BN.2.1 2022-09-03
BR.1 2022-09-03
BM.2 2022-09-03
BM.3 2022-09-03
BM.1.1 2022-09-03
BL.2 2022-09-03
BL.3 2022-09-03
BA.2.75.6 2022-09-03
BA.2.75.7 2022-09-03
BL.4 2022-09-03
BA.5.1.19 2022-09-04
BA.4.6.1 2022-09-05
BA.5.2.14 2022-09-06
BA.5.2.13 2022-09-06
BM.4 2022-09-07
BM.4.1 2022-09-07
BA.5.1.20 2022-09-07
BQ.1.1 2022-09-09
BS.1 2022-09-12
BA.5.2.15 2022-09-12
BA.5.1.21 2022-09-14
BA.5.2.16 2022-09-14
BT.1 2022-09-14
XBA 2022-09-14
BA.5.2.17 2022-09-15
BF.23 2022-09-15
BU.1 2022-09-16
BA.5.2.18 2022-09-17
BL.1.1 2022-09-17
BL.1.2 2022-09-17
XBB 2022-09-17
BR.2 2022-09-17
BM.1.1.1 2022-09-18
BA.4.1.10 2022-09-18
BA.5.10.1 2022-09-18
BA.2.83 2022-09-18
BA.5.2.19 2022-09-18
BA.5.2.20 2022-09-18
BA.5.2.21 2022-09-18
BV.1 2022-09-18
BW.1 2022-09-18
BM.5 2022-09-18
BY.1 2022-09-19
BM.4.1.1 2022-09-19
BF.24 2022-09-19
BA.2.84 2022-09-19
BA.2.31.1 2022-09-19
BA.5.2.22 2022-09-20
BA.2.75.8 2022-09-20
BA.5.2.23 2022-09-20
BE.1.2.1 2022-09-21
BZ.1 2022-09-21
BR.3 2022-09-21
CA.1 2022-09-21
BA.5.2.24 2022-09-22
BF.25 2022-09-22
BV.2 2022-09-23
BQ.1.2 2022-09-23
BQ.1.3 2022-09-23
XBC 2022-09-24
BA.5.2.25 2022-09-25
BA.5.2.26 2022-09-29
BA.5.2.27 2022-09-29
BA.5.2.28 2022-09-29
BA.5.1.22 2022-09-29
BA.5.1.23 2022-09-29
BA.5.1.24 2022-09-29
BA.5.1.25 2022-09-29
BF.26 2022-09-29
BF.27 2022-09-29
BF.28 2022-09-29
CA.2 2022-09-30
BA.2.75.9 2022-09-30
CB.1 2022-09-30
BL.1.3 2022-09-30
BS.1.1 2022-09-30
BA.2.85 2022-09-30
BA.5.2.29 2022-09-30
BE.4 2022-09-30
BE.4.1 2022-09-30
BE.4.1.1 2022-09-30
BE.1.1.2 2022-09-30
CC.1 2022-09-30
BA.5.2.30 2022-09-30
BA.5.2.31 2022-09-30
CD.1 2022-09-30
CD.2 2022-09-30
BA.5.2.32 2022-09-30
BA.5.2.33 2022-09-30
CE.1 2022-09-30
BA.5.1.26 2022-09-30
BA.5.1.27 2022-09-30
BA.5.1.28 2022-09-30
CF.1 2022-09-30
CG.1 2022-10-03
XBB.1 2022-10-03
BQ.1.4 2022-10-03
XBC.1 2022-10-03

What's Changed

  • Added new lineage BA.5.2.6 from #870 with 65 new designations and 14 updated from BA.5.2 by @corneliusroemer in #970
  • Added new lineage BA.2.75.3 from #965 with 104 new designations and 3 updated from BA.2.75 by @corneliusroemer in #971
  • Added new lineage BA.5.2.7 with 59 new designations and 3 updated from BA.5.2 by @corneliusroemer in #972
  • Added new lineage BF.15 from #893 with 53 new designations and 3 updated from BA.5.2.1 by @corneliusroemer in #973
  • Added new lineage BA.4.8 from #670 with 49 new designations and 8 changed from BA.4 by @corneliusroemer in #974
  • Added new lineage BA.2.75.4 from #935 with 14 new designations by @corneliusroemer in #975
  • Added new lineage BL.1 from #944 with 27 new designations by @corneliusroemer in #976
  • Added new lineage BA.5.1.12 from #902 with 56 new designations and 3 updated from BA.5.1 by @corneliusroemer in #977
  • Added new recombinant lineage XAS from #882 with 45 new sequence designations, and 3 updated designations from BA.4 by @InfrPopGen in #978
  • Added new lineage BA.2.75.5 from #947 with 23 new designations by @corneliusroemer in #979
  • Added new recombinant lineage XAT from #885 with 74 new sequence designations, and 0 updated designations by @InfrPopGen in #980
  • Added new recombinant lineage XAU from #894 with 77 new sequence designations, and 0 updated designations by @InfrPopGen in #982
  • Added new recombinant lineage XAV from #911 with 59 new sequence designations, and 2 updated designations from BA.5 by @InfrPopGen in #984
  • Added new lineage BF.16 from #942 with 54 new sequence designations, and 5 updated designations from BA.5.2.1 by @InfrPopGen in #986
  • Added new recombinant lineage XAZ from #797 with 730 new sequence designations, and 244 updated from BA.5 by @InfrPopGen in #997
  • Added new lineage BA.4.1.9 from #926 with 62 new sequence designations, and 5 updated designations from BA.4.1 by @InfrPopGen in #998
  • Added new lineage BA.5.1.18 from #930 with 52 new sequence designations, and 11 updated designations from BA.5.1 by @InfrPopGen in #1001
  • Added new lineage BA.5.5.2 from #938 with 446 new sequence designations, and 64 updated designations from BA.5.5 by @InfrPopGen in #1004
  • Added new lineage BM.1 from #965 with 45 new designations and 8 updated from BA.2.75 and BA.2.75.3 by @corneliusroemer in #1008
  • Added new lineage BA.5.1.19 from #999 with 177 new sequence designations, and 23 updated designations from BA.5.1 by @InfrPopGen in #1028
  • Added new lineage BA.4.6.1 from #900 with 191 new sequence designations, and 21 updated designations from BA.4.6 by @InfrPopGen in #1033
  • Added new lineage BA.5.2.13 from #959 with 66 new sequence designations, and 3 updated designations from BA.5.2 by @InfrPopGen in #1044
  • Fixing typo in lineage designation by @InfrPopGen in #1045
  • Added new lineage BM.4 from #957 with 10 new sequence designations, and 7 updated designations from BA.2.75* by @InfrPopGen in #1048
  • Added new lineage BA.5.1.20 from #1000 with 30 new sequence designations, and 3 updated designations from BA.5.1 by @InfrPopGen in #1049
  • Added new lineage BA.5.2.14 from #1002 with 9 new sequence designations, and 0 updated designations by @InfrPopGen in #1055
  • Added new lineage BA.5.2.15 from #1054 with 34 new sequence designations, and 1 updated designations from BA.5.2 by @InfrPopGen in #1057
  • Added new lineage BA.5.1.21 from #958 with 911 new sequence designations, and 129 updated designations from BA.5.1 by @InfrPopGen in #1064
  • Added new sublineage BT.1 from #958 with 0 new sequence designations, and 188 updated designations from BA.5.1.21, and updated lineages.csv by @InfrPopGen in #1067
  • Added new recombinant lineage XBA from #844 with 4 new sequence designations, and 0 updated designations by @InfrPopGen in #1068
  • Added new lineage BA.5.2.17 from #1019 with 36 new sequence designations, and 0 updated designations by @InfrPopGen in #1070
  • Added new lineage BF.23 from #1036 with 136 new sequence designations, and 34 updated designations from BA.5.2.1 by @InfrPopGen in #1071
  • Added new lineage BA.5.2.22 from #945 with 1209 new sequence designations, and 11 updated designations from BA.5.2.21, one from BA.5.2.16, and 87 from BA.5.2 by @InfrPopGen in #1092
  • Added new lineage BA.5.2.23 from #1090 with 25 new sequence designations, and 0 updated designations by @InfrPopGen in #1093
  • Added new recombinant lineage XBC from #1100 with 7 new sequence designations, and 0 updated designations by @InfrPopGen in #1107
  • Added new lineage BA.5.2.25 from #1111 with 25 new sequence designations, and 0 updated by @InfrPopGen in #1116
  • Added new lineage BA.2.85 from #983 with 148 new sequence designations, and 0 updated designations by @InfrPopGen in...
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Contributors

corneliusroemer and InfrPopGen
Assets 2
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pango-designation v1.14

19 Aug 16:06
@chrisruis chrisruis
v1.14
cd17027
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pango-designation v1.14
  • Added lineage BA.2.75.1 from #856 with 42 new sequence designations, and 2 updated designations from BA.2.75
  • Added new lineage BA.2.10.4 from #898 with 7 new sequence designations
  • Added new lineage BJ.1 from #915 with 6 new sequence designations
  • Added new lineage BA.2.38.3 from #840 with 27 new sequence designations, and 0 updated designations
  • Added new lineage BA.2.75.2 from #963 with 10 new designations
  • Added new lineage BA.2.76.1 from #899 with 18 new sequence designations
  • Added new lineage BA.2.76.2 from #939 with 26 new designations
  • Added new lineage BA.2.9.6 from #671 with 410 new sequence designations, and 1 updated designation from BA.2
  • Added new lineage BA.5.1.10 from #901 with 910 new sequence designations, and 203 updated designations from BA.5.1
  • Added new lineage BA.5.1.11 from #908 with 327 new designations and 47 updated from BA.5.1
  • Added new lineage BA.5.1.9 from #786 with 161 new sequence designations, and 52 updated designations from BA.5.1
  • Added new lineage BA.5.10 from #936 with 37 new sequence designations, and 3 updated designations from BA.5
  • Added new lineage BA.5.5.1 from #873 with 93 new sequence designations, and 0 updated designations
  • Added new lineage BA.5.6.2 from #903 with 45 new sequence designations, and 24 updated designations from BA.5.6
  • Added new lineage BF.13 from #883 with 29 new sequence designations, and 7 updated designations from BA.5.2.1
  • Added new lineage BE.1.2 from #923 with 41 new sequence designations
  • Added new lineage BF.14 from #843 with 36 new designations and 24 updated from BA.5.2.1
  • Added new lineage BG.6 from #836 with 36 new sequence designations and 5 updated from BA.2.12.1
  • Added new lineage BH.1 from #913 with 14 new sequence designations, and 1 updated designation from BA.2.38.3
  • Added new lineage BK.1 from #901 with 0 new sequence designations, and 93 updated designations from BA.5.1.10
  • Added new recombinant lineage XAQ from #798 with 74 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAR from #860 with 49 new sequence designations, and 0 updated designations
  • Duplicates resolved mostly by agreement between big tree placement and pangolin (usher mode) assignment, & manually where those disagree. Removed some sequences because they looked like mixtures or had too many reversions or run-of-bases substitutions.
  • Removed 3194 sequences from an odd branch in BA.1 (reversions and/or BA.2 mutations) with multiple mini-BA.1 sub-branches implying errors in sequences and/or tree-building.
  • Withdrew BA.2.36.1 from #874 and re-designated as BA.2.82
Assets 2
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pango-designation v1.13

01 Aug 10:32
@chrisruis chrisruis
v1.13
141785f
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pango-designation v1.13
  • Added new lineage BA.2.13.1 from #785 with 415 new sequence designations, and 25 updated designations from BA.2, and 2 updated from BA.2.13
  • Added new lineage BA.2.3.19 from #824 with 23 new sequence designations, and 0 updated
  • Added new lineage BA.2.36.1 from #874 with 68 new sequence designations, and 1 updated designations from BA.2
  • Added new lineage BA.2.38.2 from #828 with 55 new sequence designations, and 2 updated designations from BA.2.38
  • Added new lineage BA.2.81 with 303 new sequence designations and 6 updated from BA.2
  • Added new lineage BA.2.9.5 with 483 new sequence designations and 44 updated from BA.2.9
  • Added new lineage BA.4.1.5 with 172 new sequence designations and 39 updated from BA.4.1
  • Added new lineage BA.4.1.6 with 474 new sequence designations and 56 updated from BA.4.1
  • Added new lineage BA.4.1.7 with 42 new sequence designations and 5 updated from BA.4.1
  • Added new lineage BA.4.1.8 from #800 with 71 new sequence designations, and 5 updated designations from BA.4.1
  • Added new lineage BA.4.7 from #777 with 33 new sequence designations, and 11 updated designations from BA.4
  • Added new lineage BA.5.1.5 from #835 with 173 new sequence designations, and 7 updated designations from BA.5.1
  • Added new lineage BA.5.1.6 with 266 new sequence designations and 9 updated from BA.5.1
  • Added new lineage BA.5.1.7 with 120 new sequence designations and 1 updated from BA.5.1
  • Added new lineage BA.5.1.8 with 71 new sequence designations and 3 updated from BA.5.1
  • Added new lineage BA.5.2.5 with 51 new sequence designations
  • Added new lineage BA.5.6.1 with 44 new sequence designations
  • Added new lineage BA.5.7 with 62 new sequence designations and 8 updated from BA.5
  • Added new lineage BA.5.8 from #743 with 1048 new sequence designations, and 229 updated designations from BA.5
  • Added new lineage BA.5.9 from #753 with 156 new sequence designations, and 61 updated designations from BA.5
  • Added new lineage BF.10 with 1307 new sequence designations and 44 updated from BA.5.2.1
  • Added new lineage BF.11 from #837 with 45 new sequence designations, and 0 updated designations
  • Added new lineage BF.12 from #752 with 59 new sequence designations, and 4 updated designations from BA.5.2.1
  • Added new lineage BF.3.1 from #825 with 35 new sequence designations, and 5 updated designations from BF.3
  • Added new lineage BF.6 from #821 with 55 new sequence designations, and 5 updated designations from BA.5.2.1
  • Added new lineage BF.7 from #827 with 59 new sequence designations, and 15 updated designations from BA.5.2.1
  • Added new lineage BF.8 with 661 new sequence designations and 45 updated from BA.5.2.1
  • Added new lineage BF.9 with 84 new sequence designations
  • Added new lineage BG.5 from #763 with 1203 new sequence designations, and 41 updated designations from BA.2.12.1
  • Added new recombinant lineage XAJ from #826 with 35 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAK from #823 with 55 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAL from #757 with 95 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAM from #759 with 341 new sequence designations, and 3 updated designations
  • Added new recombinant lineage XAN from #771 with 35 new sequence designations, and 4 updated designations
  • Added new recombinant lineage XAP from #789 with 69 new sequence designations, and 0 updated designations
  • Added 100 new BA.2.75 sequence designations
  • Added 100 new BF.6 sequence designations
  • Added 1000 new BA.2.13 sequence designations
  • Added 1000 new BA.2.18 sequence designations
  • Added 1000 new BA.4.6 sequence designations
  • Added 1000 new BA.5.1.1 sequence designations
  • Added 1000 new BA.5.3.1 sequence designations
  • Added 1000 new BF.1 sequence designations
  • Added 10000 new BA.5.1 sequence designations
  • Added 10000 new BA.5.2 sequence designations
  • Added 10000 new BA.5.2.1 sequence designations
  • Added 150 new BF.3 sequence designations
  • Added 200 new BA.2.43 sequence designations
  • Added 200 new BA.2.74 sequence designations
  • Added 200 new BA.4.1.4 sequence designations
  • Added 200 new BA.4.5 sequence designations
  • Added 2000 new BA.2.36 sequence designations
  • Added 2000 new BA.5.6 sequence designations
  • Added 2000 new BE.1 sequence designations
  • Added 2000 new BE.1.1 sequence designations
  • Added 20000 new BA.2.12.1 sequence designations
  • Added 300 new BA.5.2.2 sequence designations
  • Added 300 new BA.5.3.2 sequence designations
  • Added 300 new BF.4 sequence designations
  • Added 300 new BG.2 sequence designations
  • Added 50 new BA.2.3.7 sequence designations
  • Added 500 new BA.2.21 sequence designations
  • Added 500 new BA.2.76 sequence designations
  • Added 500 new BA.5.1.2 sequence designations
  • Added 500 new BA.5.1.3 sequence designations
  • Added 500 new BA.5.2.3 sequence designations
  • Added 5000 new BA.4.1 sequence designations
  • Deprecating utils/aliasing.py in favor of pango_aliasor package
Assets 2
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