BA.5.2.7(S:K444M) sublineage with S:N460K (T22942G) 20 sequences circulating in Benelux

[FedeGueli]

Here i want to propose another combo S:444/460.

This time it appeared in BA.5.2.7 (S:444M) .

Defining mutations

A28330G > C1627T > C27513T > C27012T > G12310A > C16616A > C17958T > T2058C > A22893T > T22942G
S:N460K (T22942G)

EDITED
Gisaid query: NSP2_M418T,Spike_K444M,Spike_N460K
finds 13 sequences

Number of sequences from Usher: 11

Expand for EPI_ISLs

EPI_ISL_15250146 EPI_ISL_15223056 EPI_ISL_15285602 EPI_ISL_15313211 EPI_ISL_15433780 EPI_ISL_15422617 EPI_ISL_15285895 EPI_ISL_15216299 EPI_ISL_15374736 EPI_ISL_15175819

Countries:

CovSpectrum: BA.5.2.7* (Nextclade) + S:N460K finds 10
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?aaMutations=S%3AN460K&nextcladePangoLineage=BA.5.2.7*&aaMutations1=S%3A153I%2CS%3A1258Q%2CN%3A151L&

Tree:

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_237c9_3aaa70.json?c=pango_lineage_usher&label=nuc%20mutations:T22942G

[FedeGueli]

New query posted above finds 13 seqs.

[FedeGueli]

15 seqs now with NSP2_M418T,Spike_K444M,Spike_N460K :
The new sequences are from: one from Chile, one from Germany

[FedeGueli]

Two more sequences from netherlands

[FedeGueli]

three more sequences from Luxembourg this is going quite fast @corneliusroemer

[InfrPopGen]

Thanks for submitting. We've added lineage CY.1 with 3 newly designated sequences, and 0 updated designations. Defining mutation T22942G (S:N460K) (following A22893T (S:K444M)).

[FedeGueli]

Thx @InfrPopGen !

[Mydtlwn]

Is it not good that CY.1 in the file lineage_notes.txt is placed under CW? After all, CY.1 is a child of Ba.5.2.7, and there is a big difference between them.