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python310Packages.nbconvert: use mistune 2.x#186804

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smancill merged 1 commit intoNixOS:masterfrom
smancill:python3-nconvert-use-mistune-2.x
Aug 17, 2022
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python310Packages.nbconvert: use mistune 2.x#186804
smancill merged 1 commit intoNixOS:masterfrom
smancill:python3-nconvert-use-mistune-2.x

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Description of changes

mistune 0.8 was removed by #186272.

Patch the sources to use mistune 2.x.

Things done
  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandbox = true set in nix.conf? (See Nix manual)
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 22.11 Release Notes (or backporting 22.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
    • (Release notes changes) Ran nixos/doc/manual/md-to-db.sh to update generated release notes
  • Fits CONTRIBUTING.md.

@github-actions github-actions bot added the 6.topic: python Python is a high-level, general-purpose programming language. label Aug 15, 2022
@ofborg ofborg bot added 10.rebuild-darwin: 101-500 This PR causes between 101 and 500 packages to rebuild on Darwin. 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. labels Aug 15, 2022
@smancill
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@ofborg build python310Packages.jupyter

@superherointj
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Result of nixpkgs-review pr 186804 run on x86_64-linux 1

45 packages failed to build:
  • manim
  • python310Packages.arviz
  • python310Packages.dalle-mini
  • python310Packages.elegy
  • python310Packages.folium
  • python310Packages.jupyterlab
  • python310Packages.jupyterlab-git
  • python310Packages.jupyterlab-lsp
  • python310Packages.jupytext
  • python310Packages.nbclassic
  • python310Packages.osmnx
  • python310Packages.pymc
  • python310Packages.qiskit
  • python310Packages.qiskit-aer
  • python310Packages.qiskit-finance
  • python310Packages.qiskit-ibmq-provider
  • python310Packages.qiskit-ignis
  • python310Packages.qiskit-nature
  • python310Packages.qiskit-optimization
  • spyder (python310Packages.spyder)
  • python310Packages.treex
  • python39Packages.arviz
  • python39Packages.dalle-mini
  • python39Packages.elegy
  • python39Packages.folium
  • python39Packages.jupyterlab
  • python39Packages.jupyterlab-git
  • python39Packages.jupyterlab-lsp
  • python39Packages.jupyterlab_server
  • python39Packages.jupytext
  • python39Packages.modeled
  • python39Packages.nbclassic
  • python39Packages.osmnx
  • python39Packages.pymc
  • python39Packages.qiskit
  • python39Packages.qiskit-aer
  • python39Packages.qiskit-finance
  • python39Packages.qiskit-ibmq-provider
  • python39Packages.qiskit-ignis
  • python39Packages.qiskit-nature
  • python39Packages.qiskit-optimization
  • python39Packages.robotframework-tools
  • python39Packages.spyder
  • python39Packages.treex
  • wolfram-notebook
76 packages built:
  • ihaskell
  • jupyter
  • opsdroid
  • python310Packages.Nikola
  • python310Packages.Pweave
  • python310Packages.ansible-kernel
  • python310Packages.augmax
  • python310Packages.batchspawner
  • python310Packages.datashader
  • python310Packages.dockerspawner
  • python310Packages.einops
  • python310Packages.jupyter
  • python310Packages.jupyter-lsp
  • python310Packages.jupyter-server-mathjax
  • python310Packages.jupyter-sphinx
  • python310Packages.jupyter_server
  • python310Packages.jupyterhub
  • python310Packages.jupyterhub-ldapauthenticator
  • python310Packages.jupyterhub-systemdspawner
  • python310Packages.jupyterhub-tmpauthenticator
  • python310Packages.jupyterlab_launcher
  • python310Packages.jupyterlab_server
  • python310Packages.livelossplot
  • python310Packages.nbconflux
  • python310Packages.nbconvert
  • python310Packages.nbdime
  • python310Packages.nbsmoke
  • python310Packages.nbsphinx
  • python310Packages.nix-kernel
  • python310Packages.notebook
  • python310Packages.notedown
  • python310Packages.oauthenticator
  • python310Packages.papermill
  • python310Packages.phik
  • python310Packages.qiskit-machine-learning
  • python310Packages.qiskit-terra
  • python310Packages.vega
  • python310Packages.xarray-einstats
  • python39Packages.Nikola
  • python39Packages.Pweave
  • python39Packages.ansible-kernel
  • python39Packages.augmax
  • python39Packages.batchspawner
  • python39Packages.datashader
  • python39Packages.dockerspawner
  • python39Packages.einops
  • python39Packages.jupyter
  • python39Packages.jupyter-lsp
  • python39Packages.jupyter-server-mathjax
  • python39Packages.jupyter-sphinx
  • python39Packages.jupyter_server
  • python39Packages.jupyterhub
  • python39Packages.jupyterhub-ldapauthenticator
  • python39Packages.jupyterhub-systemdspawner
  • python39Packages.jupyterhub-tmpauthenticator
  • python39Packages.jupyterlab_launcher
  • python39Packages.livelossplot
  • python39Packages.moretools
  • python39Packages.nbconflux
  • python39Packages.nbconvert
  • python39Packages.nbdime
  • python39Packages.nbsmoke
  • python39Packages.nbsphinx
  • python39Packages.nix-kernel
  • python39Packages.notebook
  • python39Packages.notedown
  • python39Packages.oauthenticator
  • python39Packages.papermill
  • python39Packages.phik
  • python39Packages.qiskit-machine-learning
  • python39Packages.qiskit-terra
  • python39Packages.vega
  • python39Packages.xarray-einstats
  • python39Packages.zetup
  • sage
  • sageWithDoc

@smancill
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smancill commented Aug 15, 2022

Too many failing packages still, that's not good.

nbclassic is currently broken (it will be fixed by #186703). Could that be the main culprit?

@smancill
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@ofborg build python310Packages.jupyterlab python310Packages.folium

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smancill commented Aug 15, 2022

@anthonyroussel
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Result of nixpkgs-review pr 186804 run on x86_64-linux 1

51 packages failed to build and already failed to build on hydra master:
  • manim: log was empty
  • python310Packages.arviz: log was empty
  • python310Packages.batchspawner: log was empty
  • python310Packages.dalle-mini: log was empty
  • python310Packages.dockerspawner: log was empty
  • python310Packages.elegy: log was empty
  • python310Packages.folium: log was empty
  • python310Packages.jupyterhub: log was empty
  • python310Packages.jupyterhub-ldapauthenticator: log was empty
  • python310Packages.jupyterhub-systemdspawner: log was empty
  • python310Packages.jupyterhub-tmpauthenticator: log was empty
  • python310Packages.jupyterlab: log was empty
  • python310Packages.jupyterlab-git: log was empty
  • python310Packages.jupyterlab-lsp: log was empty
  • python310Packages.jupytext: log was empty
  • python310Packages.nbclassic: log was empty
  • python310Packages.oauthenticator: log was empty
  • python310Packages.osmnx: log was empty
  • python310Packages.pymc: log was empty
  • python310Packages.qiskit: log was empty
  • python310Packages.qiskit-aer: log was empty
  • python310Packages.qiskit-finance: log was empty
  • python310Packages.qiskit-ibmq-provider: log was empty
  • python310Packages.qiskit-ignis: log was empty
  • python310Packages.qiskit-nature: log was empty
  • python310Packages.qiskit-optimization: log was empty
  • spyder: log was empty
  • python310Packages.treex: log was empty
  • python39Packages.arviz: log was empty
  • python39Packages.dalle-mini: log was empty
  • python39Packages.elegy: log was empty
  • python39Packages.folium: log was empty
  • python39Packages.jupyterlab: log was empty
  • python39Packages.jupyterlab-git: log was empty
  • python39Packages.jupyterlab-lsp: log was empty
  • python39Packages.jupyterlab_server: log was empty
  • python39Packages.jupytext: log was empty
  • python39Packages.modeled: log was empty
  • python39Packages.nbclassic: log was empty
  • python39Packages.osmnx: log was empty
  • python39Packages.pymc: log was empty
  • python39Packages.qiskit: log was empty
  • python39Packages.qiskit-aer: log was empty
  • python39Packages.qiskit-finance: log was empty
  • python39Packages.qiskit-ibmq-provider: log was empty
  • python39Packages.qiskit-ignis: log was empty
  • python39Packages.qiskit-nature: log was empty
  • python39Packages.qiskit-optimization: log was empty
  • python39Packages.robotframework-tools: log was empty
  • python39Packages.spyder: log was empty
  • python39Packages.treex: log was empty
2 packages failed to build and are new build failures:
  • (python310Packages.spyder): log was empty
  • wolfram-notebook: log was empty
67 packages built:
  • ihaskell
  • jupyter
  • opsdroid
  • python310Packages.Nikola
  • python310Packages.Pweave
  • python310Packages.ansible-kernel
  • python310Packages.augmax
  • python310Packages.datashader
  • python310Packages.einops
  • python310Packages.jupyter
  • python310Packages.jupyter-lsp
  • python310Packages.jupyter-server-mathjax
  • python310Packages.jupyter-sphinx
  • python310Packages.jupyter_server
  • python310Packages.jupyterlab_launcher
  • python310Packages.jupyterlab_server
  • python310Packages.livelossplot
  • python310Packages.nbconflux
  • python310Packages.nbconvert
  • python310Packages.nbdime
  • python310Packages.nbsmoke
  • python310Packages.nbsphinx
  • python310Packages.nix-kernel
  • python310Packages.notebook
  • python310Packages.notedown
  • python310Packages.papermill
  • python310Packages.phik
  • python310Packages.qiskit-machine-learning
  • python310Packages.qiskit-terra
  • python310Packages.vega
  • python310Packages.xarray-einstats
  • python39Packages.Nikola
  • python39Packages.Pweave
  • python39Packages.ansible-kernel
  • python39Packages.augmax
  • python39Packages.batchspawner
  • python39Packages.datashader
  • python39Packages.dockerspawner
  • python39Packages.einops
  • python39Packages.jupyter
  • python39Packages.jupyter-lsp
  • python39Packages.jupyter-server-mathjax
  • python39Packages.jupyter-sphinx
  • python39Packages.jupyter_server
  • python39Packages.jupyterhub
  • python39Packages.jupyterhub-ldapauthenticator
  • python39Packages.jupyterhub-systemdspawner
  • python39Packages.jupyterhub-tmpauthenticator
  • python39Packages.jupyterlab_launcher
  • python39Packages.livelossplot
  • python39Packages.moretools
  • python39Packages.nbconflux
  • python39Packages.nbconvert
  • python39Packages.nbdime
  • python39Packages.nbsmoke
  • python39Packages.nbsphinx
  • python39Packages.nix-kernel
  • python39Packages.notebook
  • python39Packages.notedown
  • python39Packages.oauthenticator
  • python39Packages.papermill
  • python39Packages.phik
  • python39Packages.qiskit-machine-learning
  • python39Packages.qiskit-terra
  • python39Packages.vega
  • python39Packages.xarray-einstats
  • python39Packages.zetup

The following issues got detected with the above build packages.
Please fix at least the ones listed with your changed packages:

Details ihaskell:

Package is missing a meta section.
If the package is using runCommand please make sure to inherit or create a meta section.

got build log for '/nix/store/4ss4y20jchfj2v2808m19kgryawn6v49-ihaskell-with-packages' from 'daemon'
When evaluating attribute ‘ihaskell’:
warning: unused-argument
Unused argument: paths.
Near pkgs/build-support/trivial-builders.nix:433:12:

    |
433 |          , paths
    |            ^

@smancill smancill requested a review from dotlambda August 15, 2022 20:24
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risicle commented Aug 15, 2022

As others are finding, what with the muddle of recent breakages it's hard to tell, but I don't think this causes any new breakages for nixpkgs-review on macos 10.15.

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Some tests related to folium fail.

@bobby285271 bobby285271 added the 12.approvals: 1 This PR was reviewed and approved by one person. label Aug 16, 2022
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onny commented Aug 17, 2022

There's also a new version of nbconvert available: 6.5.3

@smancill
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Some tests related to folium fail.

It was already broken, so it's unrelated to this PR: https://hydra.nixos.org/job/nixpkgs/trunk/python310Packages.folium.x86_64-linux

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There's also a new version of nbconvert available: 6.5.3

Support for mistune 2.x was added in the 7.x RC, so that new 6.5.3 version will not affect this.

@smancill smancill force-pushed the python3-nconvert-use-mistune-2.x branch from ff332d7 to 8d05ef5 Compare August 17, 2022 12:47
@smancill smancill merged commit dc87e16 into NixOS:master Aug 17, 2022
@smancill smancill deleted the python3-nconvert-use-mistune-2.x branch August 17, 2022 13:09
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This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/jupyter-broken-in-22-05/21108/1

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Successfully created backport PR #187550 for release-22.05.

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6.topic: python Python is a high-level, general-purpose programming language. 10.rebuild-darwin: 101-500 This PR causes between 101 and 500 packages to rebuild on Darwin. 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. 12.approvals: 1 This PR was reviewed and approved by one person.

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python310Packages.nbconvert build failure on x86_64-linux as of a093c35b

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