v0.34

• Fixing problem with left-trimming variants (#99).

v0.33

• Fixing bug triggered for GRCh38 without chr prefix (#98).

v0.32

• Fixing bug when annotating MELT with missing AD (#95).

v0.31

• Interpret FORMAT/SQ as Float (#93).

v0.30

• Adding support for MELT (#91).

v0.29

• Fix with merging SV annotation files from Delly2 SV (#88).

v0.28

• Write out FORMAT/SQ in the case that is present and FORMAT/GQ is not (#84).
  If neither is set, then write out 0.
  Write out 0 for AD and DP as well if missing.
  This improves compatibility with Manta.
• Suppress BND records that point to non-allow-listed contigs (#85).
  This is required for processing Manta and Delly2 results, for example.

v0.27

IMPORTANT COMPATIBILITY NOTE:
For annotating SVs, the output of this version is not compatible with varfish-server v1.2 (Anthenea) and early versions of the v2 (Bollonaster) development branch.
You can generate compatible files by adding the --opt-out=chrom2-columns,dbcounts-columns,callers-array as arguments to annotate-svs.

• Writing out proper SV type for Dragen CNV (#76)
• Adding support for depth of coverage annotation (#73)
• Ensure output files are sorted by chromosomes (#79)
• Handle multiple input VCFs in annotate-svs with filtering (#75)
• Write out SV callers as array (#81)

v0.26

• Explicitely model support for SV callers (#68)
• Removing explicit support for SV2 (#67)
• Adding end-to-end tests hg19-chr22 (#61)

v0.25

• Fixing unresolved issue with self-test (#51, #56)