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Ensure output is always sorted #79

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holtgrewe opened this issue Sep 19, 2022 · 0 comments · Fixed by #80
Closed

Ensure output is always sorted #79

holtgrewe opened this issue Sep 19, 2022 · 0 comments · Fixed by #80
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enhancement New feature or request
Milestone
v0.27

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@holtgrewe
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Is your feature request related to a problem? Please describe.
annotate-svs output might not be sorted by (chrom, pos) as we write might write out mate records.

Describe the solution you'd like
Sort output files, e.g., using external sorting.

Describe alternatives you've considered
N/A

Additional context
N/A
@holtgrewe holtgrewe added the enhancement New feature or request label Sep 19, 2022
holtgrewe added a commit that referenced this issue Sep 19, 2022
@holtgrewe
Ensure output files are sorted by chromosomes (#79)
7b01788 
Closes: #79
Related-Issue: #79
Projected-Results-Impact: require-revalidation
holtgrewe added a commit that referenced this issue Sep 19, 2022
@holtgrewe
Ensure output files are sorted by chromosomes (#79)
f87067f 
Closes: #79
Related-Issue: #79
Projected-Results-Impact: require-revalidation
@holtgrewe holtgrewe linked a pull request Sep 19, 2022 that will close this issue
79 ensure output is always sorted #80
Merged
@holtgrewe holtgrewe added this to the v0.27 milestone Sep 19, 2022
holtgrewe added a commit that referenced this issue Sep 19, 2022
@holtgrewe
Ensure output files are sorted by chromosomes (#79)
2647211 
Closes: #79
Related-Issue: #79
Projected-Results-Impact: require-revalidation
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79 ensure output is always sorted varfish-org/varfish-annotator
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@holtgrewe