[MRG] fix a problem where sourmash ignores all lowercase sequence. #480
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
@@ Coverage Diff @@
## master #480 +/- ##
==========================================
+ Coverage 90.51% 90.51% +<.01%
==========================================
Files 33 33
Lines 4892 4893 +1
Branches 36 36
==========================================
+ Hits 4428 4429 +1
Misses 463 463
Partials 1 1
Continue to review full report at Codecov.
|
|
Ready for review and merge @luizirber |
luizirber
approved these changes
May 27, 2018
ctb
pushed a commit
that referenced
this pull request
Oct 28, 2022
Updates the requirements on [pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the latest version. <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's changelog</a>.</em></p> <blockquote> <h2>4.0.0 (2022-09-28)</h2> <p><strong>Note that this release drops support for multiprocessing.</strong></p> <ul> <li> <p><code>--cov-fail-under</code> no longer causes <code>pytest --collect-only</code> to fail Contributed by Zac Hatfield-Dodds in <code>[#511](pytest-dev/pytest-cov#511) <https://github.com/pytest-dev/pytest-cov/pull/511></code>_.</p> </li> <li> <p>Dropped support for multiprocessing (mostly because <code>issue 82408 <https://github.com/python/cpython/issues/82408></code>_). This feature was mostly working but very broken in certain scenarios and made the test suite very flaky and slow.</p> <p>There is builtin multiprocessing support in coverage and you can migrate to that. All you need is this in your <code>.coveragerc</code>::</p> <p>[run] concurrency = multiprocessing parallel = true sigterm = true</p> </li> <li> <p>Fixed deprecation in <code>setup.py</code> by trying to import setuptools before distutils. Contributed by Ben Greiner in <code>[#545](pytest-dev/pytest-cov#545) <https://github.com/pytest-dev/pytest-cov/pull/545></code>_.</p> </li> <li> <p>Removed undesirable new lines that were displayed while reporting was disabled. Contributed by Delgan in <code>[#540](pytest-dev/pytest-cov#540) <https://github.com/pytest-dev/pytest-cov/pull/540></code>_.</p> </li> <li> <p>Documentation fixes. Contributed by Andre Brisco in <code>[#543](pytest-dev/pytest-cov#543) <https://github.com/pytest-dev/pytest-cov/pull/543></code>_ and Colin O'Dell in <code>[#525](pytest-dev/pytest-cov#525) <https://github.com/pytest-dev/pytest-cov/pull/525></code>_.</p> </li> <li> <p>Added support for LCOV output format via <code>--cov-report=lcov</code>. Only works with coverage 6.3+. Contributed by Christian Fetzer in <code>[#536](pytest-dev/pytest-cov#536) <https://github.com/pytest-dev/pytest-cov/issues/536></code>_.</p> </li> <li> <p>Modernized pytest hook implementation. Contributed by Bruno Oliveira in <code>[#549](pytest-dev/pytest-cov#549) <https://github.com/pytest-dev/pytest-cov/pull/549></code>_ and Ronny Pfannschmidt in <code>[#550](pytest-dev/pytest-cov#550) <https://github.com/pytest-dev/pytest-cov/pull/550></code>_.</p> </li> </ul> <h2>3.0.0 (2021-10-04)</h2> <p><strong>Note that this release drops support for Python 2.7 and Python 3.5.</strong></p> <ul> <li>Added support for Python 3.10 and updated various test dependencies. Contributed by Hugo van Kemenade in <code>[#500](pytest-dev/pytest-cov#500) <https://github.com/pytest-dev/pytest-cov/pull/500></code>_.</li> <li>Switched from Travis CI to GitHub Actions. Contributed by Hugo van Kemenade in <code>[#494](pytest-dev/pytest-cov#494) <https://github.com/pytest-dev/pytest-cov/pull/494></code>_ and <code>[#495](pytest-dev/pytest-cov#495) <https://github.com/pytest-dev/pytest-cov/pull/495></code>_.</li> <li>Add a <code>--cov-reset</code> CLI option. Contributed by Danilo Šegan in <code>[#459](pytest-dev/pytest-cov#459) <https://github.com/pytest-dev/pytest-cov/pull/459></code>_.</li> <li>Improved validation of <code>--cov-fail-under</code> CLI option. Contributed by ... Ronny Pfannschmidt's desire for skark in <code>[#480](pytest-dev/pytest-cov#480) <https://github.com/pytest-dev/pytest-cov/pull/480></code>_.</li> <li>Dropped Python 2.7 support.</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/28db055bebbf3ee016a2144c8b69dd7b80b48cc5"><code>28db055</code></a> Bump version: 3.0.0 → 4.0.0</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/57e9354a86f658556fe6f15f07625c4b9a9ddf53"><code>57e9354</code></a> Really update the changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/56b810b91c9ae15d1462633c6a8a1b522ebf8e65"><code>56b810b</code></a> Update chagelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/f7fced579e36b72b57e14768026467e4c4511a40"><code>f7fced5</code></a> Add support for LCOV output</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/1211d3134bb74abb7b00c3c2209091aaab440417"><code>1211d31</code></a> Fix flake8 error</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/b077753f5d9d200815fe500d0ef23e306784e65b"><code>b077753</code></a> Use modern approach to specify hook options</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/00713b3fec90cb8c98a9e4bfb3212e574c08e67b"><code>00713b3</code></a> removed incorrect docs on <code>data_file</code>.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/b3dda36fddd3ca75689bb3645cd320aa8392aaf3"><code>b3dda36</code></a> Improve workflow with a collecting status check. (<a href="https://github-redirect.dependabot.com/pytest-dev/pytest-cov/issues/548">#548</a>)</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/218419f665229d61356f1eea3ddc8e18aa21f87c"><code>218419f</code></a> Prevent undesirable new lines to be displayed when report is disabled</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/60b73ec673c60942a3cf052ee8a1fdc442840558"><code>60b73ec</code></a> migrate build command from distutils to setuptools</li> <li>Additional commits viewable in <a href="https://github.com/pytest-dev/pytest-cov/compare/v2.12.0...v4.0.0">compare view</a></li> </ul> </details> <br /> Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
...I cannot believe it took until now to find this bug.
make testDid it pass the tests?make coverageIs the new code covered?without a major version increment. Changing file formats also requires a
major version number increment.
changes were made?