Update dbs (#479)

sourmash-bio · May 26, 2018 · 26cafa1 · 26cafa1
1 parent 011dcd7
commit 26cafa1
Showing 1 changed file with 16 additions and 12 deletions.
diff --git a/doc/databases.md b/doc/databases.md
@@ -8,9 +8,9 @@ These database are formatted for use with `sourmash search` and
 Approximately 60,000 microbial genomes (including viral and fungal)
 from NCBI RefSeq.
 
-* [RefSeq k=21, 2017.05.09][0] - 3.5 GB
-* [RefSeq k=31, 2017.05.09][1] - 3.5 GB
-* [RefSeq k=51, 2017.05.09][2] - 3.5 GB
+* [RefSeq k=21, 2018.02.15][0] - 7 GB
+* [RefSeq k=31, 2018.02.15][1] - 7 GB
+* [RefSeq k=51, 2018.02.15][2] - 7.1 GB
 
 ## Genbank microbial genomes - SBT
 
@@ -20,9 +20,9 @@ These database are formatted for use with `sourmash search` and
 Approximately 100,000 microbial genomes (including viral and fungal)
 from NCBI Genbank.
 
-* [Genbank k=21, 2017.05.09][3]- 4.2 GB
-* [Genbank k=31, 2017.05.09][4] - 4.2 GB
-* [Genbank k=51, 2017.05.09][5] - 4.2 GB
+* [Genbank k=21, 2018.02.15][3]- 8.4 GB
+* [Genbank k=31, 2018.02.15][4] - 8.4 GB
+* [Genbank k=51, 2018.02.15][5] - 8.4 GB
 
 ### Details
 
@@ -43,12 +43,16 @@ sourmash compute -k 21,31,51 \
                          -o {output} \
                          {input}
 ```
-[0]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k21-2017.05.09.tar.gz
-[1]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k31-2017.05.09.tar.gz
-[2]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k51-2017.05.09.tar.gz
-[3]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k21-2017.05.09.tar.gz
-[4]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k31-2017.05.09.tar.gz
-[5]:https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k51-2017.05.09.tar.gz
+
+See https://github.com/dib-lab/sourmash_databases for a Snakemake workflow
+to build the databases.
+
+[0]: https://s3-us-west-2.amazonaws.com/sourmash-databases/refseq-d2-k21.tar.gz
+[1]: https://s3-us-west-2.amazonaws.com/sourmash-databases/refseq-d2-k31.tar.gz
+[2]: https://s3-us-west-2.amazonaws.com/sourmash-databases/refseq-d2-k51.tar.gz
+[3]: https://s3-us-west-2.amazonaws.com/sourmash-databases/genbank-d2-k21.tar.gz
+[4]: https://s3-us-west-2.amazonaws.com/sourmash-databases/genbank-d2-k31.tar.gz
+[5]: https://s3-us-west-2.amazonaws.com/sourmash-databases/genbank-d2-k51.tar.gz
 
 ## Genbank LCA Database