rnafusion v1.0.2

[matq007]

This was supposed to be 1.0.1-FIX. Had to bump the version to 1.0.2.

[apeltzer]

This was supposed to be 1.0.1-FIX. Had to bump the version to 1.0.2.

I anyways like the numeric ones better ;-)

[nf-core-bot]

##:rotating_light: Buil log output:

Branch indexing
Connecting to https://api.github.com using nf-core-bot/****** (nf-core)
Obtained Jenkinsfile from eca7b53+d32090720b79a2e43d36977753ea5102750c8727 (e9407e0)
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on ship-1 in /share/jenkins_home/workspace/nf-core_rnafusion_PR-78
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
using credential 3d82ac34-e01a-4592-a628-ce6732c445a3
Cloning the remote Git repository
Cloning with configured refspecs honoured and without tags
Cloning repository https://github.com/nf-core/rnafusion.git
> git init /share/jenkins_home/workspace/nf-core_rnafusion_PR-78 # timeout=10
Fetching upstream changes from https://github.com/nf-core/rnafusion.git
> git --version # timeout=10
using GIT_ASKPASS to set credentials nf-core
> git fetch --no-tags --progress https://github.com/nf-core/rnafusion.git +refs/pull/78/head:refs/remotes/origin/PR-78 +refs/heads/master:refs/remotes/origin/master
Fetching without tags
Merging remotes/origin/master commit d320907 into PR head commit eca7b53
> git config remote.origin.url https://github.com/nf-core/rnafusion.git # timeout=10
> git config --add remote.origin.fetch +refs/pull/78/head:refs/remotes/origin/PR-78 # timeout=10
> git config --add remote.origin.fetch +refs/heads/master:refs/remotes/origin/master # timeout=10
> git config remote.origin.url https://github.com/nf-core/rnafusion.git # timeout=10
Fetching upstream changes from https://github.com/nf-core/rnafusion.git
using GIT_ASKPASS to set credentials nf-core
> git fetch --no-tags --progress https://github.com/nf-core/rnafusion.git +refs/pull/78/head:refs/remotes/origin/PR-78 +refs/heads/master:refs/remotes/origin/master
> git config core.sparsecheckout # timeout=10
> git checkout -f eca7b53
> git merge d320907 # timeout=10
Merge succeeded, producing d602632e3a919751dd30ab9dcd41514175998772
Checking out Revision d602632e3a919751dd30ab9dcd41514175998772 (PR-78)
Commit message: "Merge commit 'd32090720b79a2e43d36977753ea5102750c8727' into HEAD"
First time build. Skipping changelog.
> git rev-parse HEAD^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f d602632e3a919751dd30ab9dcd41514175998772
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] withCredentials
Masking only exact matches of $JENKINS_API or $JENKINS_API_USR or $JENKINS_API_PSW
[Pipeline] {
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Setup environment)
[Pipeline] sh
+ pip install nf-core
Requirement already satisfied: nf-core in /home//anaconda3/lib/python3.7/site-packages (1.6)
Requirement already satisfied: tabulate in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (0.8.3)
Requirement already satisfied: click in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (7.0)
Requirement already satisfied: jsonschema in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (2.6.0)
Requirement already satisfied: requests in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (2.21.0)
Requirement already satisfied: cookiecutter in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (1.6.0)
Requirement already satisfied: requests-cache in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (0.5.0)
Requirement already satisfied: pyyaml in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (3.13)
Requirement already satisfied: GitPython in /home//anaconda3/lib/python3.7/site-packages (from nf-core) (2.1.11)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /home//anaconda3/lib/python3.7/site-packages (from requests->nf-core) (1.24.1)
Requirement already satisfied: certifi>=2017.4.17 in /home//anaconda3/lib/python3.7/site-packages (from requests->nf-core) (2018.11.29)
Requirement already satisfied: idna<2.9,>=2.5 in /home//anaconda3/lib/python3.7/site-packages (from requests->nf-core) (2.8)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home//anaconda3/lib/python3.7/site-packages (from requests->nf-core) (3.0.4)
Requirement already satisfied: binaryornot>=0.2.0 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (0.4.4)
Requirement already satisfied: whichcraft>=0.4.0 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (0.5.2)
Requirement already satisfied: jinja2>=2.7 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (2.10)
Requirement already satisfied: future>=0.15.2 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (0.17.1)
Requirement already satisfied: jinja2-time>=0.1.0 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (0.2.0)
Requirement already satisfied: poyo>=0.1.0 in /home//anaconda3/lib/python3.7/site-packages (from cookiecutter->nf-core) (0.4.2)
Requirement already satisfied: gitdb2>=2.0.0 in /home//anaconda3/lib/python3.7/site-packages (from GitPython->nf-core) (2.0.5)
Requirement already satisfied: MarkupSafe>=0.23 in /home//anaconda3/lib/python3.7/site-packages (from jinja2>=2.7->cookiecutter->nf-core) (1.1.0)
Requirement already satisfied: arrow in /home//anaconda3/lib/python3.7/site-packages (from jinja2-time>=0.1.0->cookiecutter->nf-core) (0.13.1)
Requirement already satisfied: smmap2>=2.0.0 in /home//anaconda3/lib/python3.7/site-packages (from gitdb2>=2.0.0->GitPython->nf-core) (2.0.5)
Requirement already satisfied: python-dateutil in /home//anaconda3/lib/python3.7/site-packages (from arrow->jinja2-time>=0.1.0->cookiecutter->nf-core) (2.7.5)
Requirement already satisfied: six>=1.5 in /home/****/anaconda3/lib/python3.7/site-packages (from python-dateutil->arrow->jinja2-time>=0.1.0->cookiecutter->nf-core) (1.12.0)
[Pipeline] sh
+ docker pull nfcore/rnafusion:1.0.2
Error response from daemon: manifest for nfcore/rnafusion:1.0.2 not found
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Lint markdown)
Stage "Lint markdown" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Build)
Stage "Build" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh

[apeltzer]

Some missing points, mostly good 👍

[apeltzer]

Can’t accept on mobile, will do this tomorrow morning