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52 Open 16 Closed
52 Open 16 Closed
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Issues list

Wrong avg_logFC?
#69 opened Nov 15, 2024 by JerryZhang-1222
2
Error in base::rowMeans(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions
#68 opened Nov 6, 2024 by AnaisJulien
ArchR project input
#67 opened Oct 18, 2024 by mjleone
1
Recommendations for filtering scATAC-seq pseudobulk data
#66 opened Oct 17, 2024 by blake-bowen
Could you add latent variable support for DESEQ2 and edgeR?
#65 opened Oct 16, 2024 by ilya-strunilin
Column cell_type is not found. Run rlang::last_trace() to see where the error occurred.
#64 opened Oct 16, 2024 by tsjzz
Question for the results of singlecell::MAST
#63 opened Sep 29, 2024 by yecotoo
Unclear Approach to Groups Comparison
#57 opened Jul 18, 2024 by DarioS
Question about batch effect correction
#56 opened Jun 17, 2024 by 1226235
2
Error in $<-.data.frame(*tmp*, "replicate", value = integer(0))
#55 opened May 17, 2024 by yuanG2000
14
Is it possible to add pct.1 / pct.2 column in the result?
#54 opened May 6, 2024 by jamesbangbang1126
1
Mixed model methods retuning only one cell type.
#53 opened Apr 30, 2024 by brianherb
1
How to correct for age, sex, etc.?
#52 opened Apr 16, 2024 by yesitsjess
1
Error: Column cell_type is not found
#51 opened Mar 12, 2024 by jamesonholloman
6
The dataset used for the demonstration hagai_toy reported an error
#50 opened Mar 7, 2024 by Taoo777
3
Error in (function (cl, name, valueClass) : "data" is not a slot in the "Assay5" category.
#49 opened Feb 5, 2024 by Pigeongeon
3
Reference level of label_col factor not respected
#48 opened Jan 16, 2024 by agrier-wcm
1
How to determine two comparison groups
#47 opened Dec 6, 2023 by yanwuanxin
“Column cell_type is not found.”
#46 opened Dec 4, 2023 by ltj-github
5
Something about the delay
#44 opened Oct 16, 2023 by JianSongHuang
Error when no cells present in one condition cell type
#43 opened Sep 23, 2023 by mhvbyrne
1
Issue of avg_logFC in pseudobulk RNA seq output file
#42 opened Aug 31, 2023 by jujurring
3
A quick question about application of liner mixed model method to detect degs
#41 opened May 4, 2023 by HelloWorldLTY
7
NA values when using mixedmodel for deg identificaiton.
#40 opened Apr 23, 2023 by HelloWorldLTY
Some questions about mixed model
#39 opened Apr 22, 2023 by HelloWorldLTY
2
ProTip! Follow long discussions with comments:>50.