Skip to content

Issues: goodarzilab/pypage

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

17 Open 16 Closed
17 Open 16 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Differential gene set enrichment analysis
#49 opened Mar 14, 2024 by abearab
Option to assign single enrichment score instead of scores per bins
#48 opened Nov 30, 2023 by abearab
1
Error in .filter_pathways method
#47 opened Aug 30, 2023 by abearab
2
A method to draw heatmap from given enrichment score matrix
#46 opened Aug 30, 2023 by abearab
Parallelization
#40 opened Jul 4, 2022 by artemy-bakulin
New discretization function
#39 opened Jul 3, 2022 by artemy-bakulin
3
Expose Heatmap kwargs to the user from PAGE.heatmap() API Improvements or additions to the API enhancement New feature or request
#37 opened Jun 28, 2022 by noamteyssier
2
Clean up the code in read annotation file in GeneOntology API Improvements or additions to the API documentation Improvements or additions to documentation Testing Write up a test
#36 opened Jun 28, 2022 by noamteyssier
1
Exploring histogram binning for gene ontology data question Further information is requested
#35 opened Jun 28, 2022 by noamteyssier
@artemy-bakulin
1
Generate Bins on ExpressionProfile after Finding Gene Intersection Algorithmic Algorithmic Improvements bug Something isn't working
#34 opened Jun 27, 2022 by noamteyssier
1
fix print bug in expression object bug Something isn't working
#31 opened Jun 1, 2022 by noamteyssier
Introduce gene -> pathway mapping as a networkx object API Improvements or additions to the API enhancement New feature or request
#30 opened May 16, 2022 by noamteyssier
update readme with new self changes bug Something isn't working documentation Improvements or additions to documentation
#29 opened May 10, 2022 by noamteyssier
Keep a record of the pathways filtered and what pathway it was collapsed into enhancement New feature or request
#21 opened May 4, 2022 by noamteyssier
Write up a command line interface CLI Command Line Interface
#20 opened Apr 29, 2022 by noamteyssier
Write up a tutorial for example usage documentation Improvements or additions to documentation
#19 opened Apr 28, 2022 by noamteyssier
1
Implement collapsing on gene homology Algorithmic Algorithmic Improvements enhancement New feature or request
#12 opened Apr 27, 2022 by noamteyssier
ProTip! Adding no:label will show everything without a label.