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{vis}[GCCcore/14.2.0] R v4.4.2#23545

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ekieffer wants to merge 2 commits intoeasybuilders:developfrom
ekieffer:20250731121714_new_pr_R442
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{vis}[GCCcore/14.2.0] R v4.4.2#23545
ekieffer wants to merge 2 commits intoeasybuilders:developfrom
ekieffer:20250731121714_new_pr_R442

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@ekieffer ekieffer commented Jul 31, 2025

(created using eb --new-pr)

@ekieffer
adding easyconfigs: R-4.4.2-gfbf-2025a.eb, LLVM-20.1.5-GCCcore-14.2.0…
d790830 
….eb, Mesa-24.1.3-GCCcore-14.2.0.eb, lit-18.1.8-GCCcore-14.2.0.eb, libGLU-9.0.3-GCCcore-14.2.0.eb
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github-actions bot commented Jul 31, 2025 •
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Updated software R-4.4.2-gfbf-2025a.eb

Diff against R-4.4.2-gfbf-2024a.eb

easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
index b0294d69ae..7a14eff140 100644
--- a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb
+++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
@@ -5,57 +5,51 @@ homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2024a'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
 checksums = ['1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec']
 
 builddependencies = [
-    ('pkgconf', '2.2.0'),
-    ('Autotools', '20231222'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20240607'),
-    ('Mesa', '24.1.3'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
     ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.5'),
+    ('XZ', '5.6.3'),
     ('zlib', '1.3.1'),
-    ('SQLite', '3.45.3'),
-    ('PCRE2', '10.43'),
-    ('libpng', '1.6.43'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '17', '', SYSTEM),
-    ('libgit2', '1.8.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '23.0.2', '', SYSTEM),
+    ('libgit2', '1.9.1'),
     ('OpenSSL', '3', '', SYSTEM),
-    ('cURL', '8.7.1'),
-    ('Tk', '8.6.14'),  # for tcltk
-    ('HarfBuzz', '9.0.0'),  # for textshaping
-    ('FriBidi', '1.0.15'),  # for textshaping
-
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
 # Adding it to FLIBS makes sure it is present when needed.
 preconfigopts = 'export FLIBS="$FLIBS -lm" && '
+configopts = "--with-pic --enable-threads --enable-R-shlib --with-recommended-packages=no"
 
-configopts = "--with-pic --enable-threads --enable-R-shlib"
-# some recommended packages may fail in a parallel build (e.g. Matrix), and
-# we're installing them anyway below
-configopts += " --with-recommended-packages=no"
 
 exts_default_options = {
-    'source_urls': [
-        'https://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
-        'https://cran.r-project.org/src/contrib/',  # current version of packages
-        'https://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
-    ],
     'source_tmpl': '%(name)s_%(version)s.tar.gz',
+    'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s',
+                    'https://cran.r-project.org/src/contrib/',
+                    'https://cran.freestatistics.org/src/contrib'],
 }
 
 # !! order of packages is important !!
@@ -75,294 +69,102 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.4', {
-        'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1'],
-    }),
-    ('Rcpp', '1.0.13-1', {
-        'checksums': ['1d1fc623d27082b5749f9584a9204de410134b6412a192157a3e42e2ba43969a'],
-    }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
-    }),
-    ('cli', '3.6.3', {
-        'checksums': ['4295085f11221c54b1dd2b1d39a675a85dfd9f900294297567e1d36f65ac4841'],
-    }),
-    ('base64enc', '0.1-3', {
-        'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
-    }),
-    ('rprojroot', '2.0.4', {
-        'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'],
-    }),
-    ('xfun', '0.49', {
-        'checksums': ['cd2102895cca4ba8b81601eab0b724ad4c7ad15485720e427fc021b950b1b375'],
-    }),
-    ('commonmark', '1.9.2', {
-        'checksums': ['1d6adcfbe8e2b8f7302bef80e2364ba4f186238e4e5593511908ade57eb486eb'],
-    }),
-    ('highr', '0.11', {
-        'checksums': ['e90d14284001963325a84a9dbeef029609d52515da8d65c87ae61be21b7fe0a7'],
-    }),
-    ('digest', '0.6.37', {
-        'checksums': ['82c4d149994b8a4a9af930f5a8e47420829935abed41f3f9030e94b6a48f0321'],
-    }),
-    ('desc', '1.4.3', {
-        'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26'],
-    }),
-    ('ellipsis', '0.3.2', {
-        'checksums': ['a90266e5eb59c7f419774d5c6d6bd5e09701a26c9218c5933c9bce6765aa1558'],
-    }),
-    ('prettyunits', '1.2.0', {
-        'checksums': ['f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea'],
-    }),
-    ('crayon', '1.5.3', {
-        'checksums': ['3e74a0685541efb5ea763b92cfd5c859df71c46b0605967a0b5dbb7326e9da69'],
-    }),
-    ('stringi', '1.8.4', {
-        'checksums': ['c219f8f64d1a2bfd4ca9528452d44d30db1899af14f4b9ef248412443bc669f3'],
-    }),
-    ('magrittr', '2.0.3', {
-        'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'],
-    }),
-    ('evaluate', '1.0.1', {
-        'checksums': ['436cc3e55b53e3c618b2f31324840875b5d66076c737af6fb31c650c783171e2'],
-    }),
-    ('ps', '1.8.1', {
-        'checksums': ['62a03b7f50173a1d12f37a09c2049772080b26fe180724ab8a8d6e73d4a80781'],
-    }),
-    ('processx', '3.8.4', {
-        'checksums': ['6627672d7fb109f37dc1d0eaef913f4cfc7ad8ac807abf0397e6d37753b1e70b'],
-    }),
-    ('callr', '3.7.6', {
-        'checksums': ['e4bce367e869e42eaeea05566d2033d8cee2103179b11cd9a401440b58a351f8'],
-    }),
-    ('pkgbuild', '1.4.5', {
-        'checksums': ['21de442b02b8b4c07f5e0ca712a4a12e98305def01c58b4333a3348709e41a00'],
-    }),
-    ('fs', '1.6.5', {
-        'checksums': ['0e3b4d40215bee77b52d158a2e4967f4408721576aaf39bc6a77024522c70b34'],
-    }),
-    ('utf8', '1.2.4', {
-        'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'],
-    }),
-    ('fansi', '1.0.6', {
-        'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'],
-    }),
-    ('pkgconfig', '2.0.3', {
-        'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850'],
-    }),
-    ('withr', '3.0.2', {
-        'checksums': ['0a3a05f493d275cca4bf13c8c1b95a1a4eed7f83b2493f41fde02ce3fc92c1a3'],
-    }),
-    ('glue', '1.8.0', {
-        'checksums': ['c86f364ba899b8662f5da3e1a75f43ae081ab04e0d51171d052356e7ee4b72a0'],
-    }),
-    ('rstudioapi', '0.17.1', {
-        'checksums': ['617ef983c8960673131fb92203fc3c64a7d3787e7479d42daba7acc49b5b3909'],
-    }),
-    ('lifecycle', '1.0.4', {
-        'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
-    }),
-    ('pkgload', '1.4.0', {
-        'checksums': ['09e4885e9cc25af29063a525da0b2ac9dd66fc7a95ea085bf5060312e3a67549'],
-    }),
-    ('fastmap', '1.2.0', {
-        'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246'],
-    }),
-    ('htmltools', '0.5.8.1', {
-        'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176'],
-    }),
-    ('yaml', '2.3.10', {
-        'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d'],
-    }),
-    ('knitr', '1.49', {
-        'checksums': ['2952c579654649387e0020f4033a70ea838e55ab04a188e0baf592f09e98a2d3'],
-    }),
-    ('mime', '0.12', {
-        'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'],
-    }),
-    ('praise', '1.0.0', {
-        'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'],
-    }),
-    ('brio', '1.1.5', {
-        'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8'],
-    }),
-    ('jsonlite', '1.8.9', {
-        'checksums': ['89f130e0e1163328c01decd54e7712b5ebf3d0a667da0052833722cb9a6e90b0'],
-    }),
-    ('vctrs', '0.6.5', {
-        'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402'],
-    }),
-    ('stringr', '1.5.1', {
-        'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de'],
-    }),
-    ('pillar', '1.9.0', {
-        'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc'],
-    }),
-    ('tibble', '3.2.1', {
-        'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131'],
-    }),
-    ('diffobj', '0.3.5', {
-        'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60'],
-    }),
-    ('rematch2', '2.1.2', {
-        'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb'],
-    }),
-    ('waldo', '0.6.1', {
-        'checksums': ['c9c3f3732a2fe7008735c8bff7b0139489132a5a8b1b8df96768fbe9dd1e76c9'],
-    }),
-    ('testthat', '3.2.1.1', {
-        'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7'],
-    }),
-    ('xml2', '1.3.6', {
-        'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'],
-    }),
-    ('curl', '6.0.1', {
-        'checksums': ['841c90bed7745f972ab524e542b1f5c3632767e3d521c163d483e436f3d42362'],
-    }),
-    ('sys', '3.4.3', {
-        'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a'],
-    }),
-    ('askpass', '1.2.1', {
-        'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd'],
-    }),
-    ('openssl', '2.2.2', {
-        'checksums': ['0cb45f413e8ce4664f79a20768fd7853c538ddb87f33819b5e7a6527ae828c96'],
-    }),
-    ('httr', '1.4.7', {
-        'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'],
-    }),
-    ('jquerylib', '0.1.4', {
-        'checksums': ['f0bcc11dcde3a6ff180277e45c24642d3da3c8690900e38f44495efbc9064411'],
-    }),
-    ('rappdirs', '0.3.3', {
-        'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'],
-    }),
-    ('sass', '0.4.9', {
-        'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2'],
-    }),
-    ('purrr', '1.0.2', {
-        'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'],
-    }),
-    ('cachem', '1.1.0', {
-        'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21'],
-    }),
-    ('memoise', '2.0.1', {
-        'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'],
-    }),
-    ('bslib', '0.8.0', {
-        'checksums': ['fd182ddb1b128691d2b0c12882361732a23d451dbf4052ba70b11257e8d44b03'],
-    }),
-    ('fontawesome', '0.5.3', {
-        'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f'],
-    }),
-    ('tinytex', '0.54', {
-        'checksums': ['fa5148e2a3813be5e174df3bae0401d282d7f7eb9fd3b173bc196fb9be90fffa'],
-    }),
-    ('rmarkdown', '2.29', {
-        'checksums': ['6662ac85316c869caad6e3b95468cad97f6eef106d47b066db8d40c05a490928'],
-    }),
-    ('downlit', '0.4.4', {
-        'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828'],
-    }),
-    ('cpp11', '0.5.0', {
-        'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3'],
-    }),
-    ('systemfonts', '1.1.0', {
-        'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644'],
-    }),
-    ('textshaping', '0.4.0', {
-        'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a'],
-    }),
-    ('ragg', '1.3.3', {
-        'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af'],
-    }),
-    ('whisker', '0.4.1', {
-        'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'],
-    }),
-    ('httr2', '1.0.6', {
-        'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5'],
-    }),
-    ('pkgdown', '2.1.1', {
-        'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde'],
-    }),
-    ('htmlwidgets', '1.6.4', {
-        'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'],
-    }),
-    ('profvis', '0.4.0', {
-        'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4'],
-    }),
-    ('urlchecker', '1.0.1', {
-        'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'],
-    }),
-    ('later', '1.3.2', {
-        'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'],
-    }),
-    ('promises', '1.3.0', {
-        'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3'],
-    }),
-    ('xtable', '1.8-4', {
-        'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'],
-    }),
-    ('httpuv', '1.6.15', {
-        'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0'],
-    }),
-    ('sourcetools', '0.1.7-1', {
-        'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'],
-    }),
-    ('shiny', '1.9.1', {
-        'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3'],
-    }),
-    ('miniUI', '0.1.1.1', {
-        'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'],
-    }),
-    ('brew', '1.0-10', {
-        'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'],
-    }),
-    ('roxygen2', '7.3.2', {
-        'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c'],
-    }),
-    ('rversions', '2.1.2', {
-        'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'],
-    }),
-    ('sessioninfo', '1.2.2', {
-        'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'],
-    }),
-    ('xopen', '1.0.1', {
-        'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec'],
-    }),
-    ('rcmdcheck', '1.4.0', {
-        'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0'],
-    }),
-    ('remotes', '2.5.0', {
-        'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c'],
-    }),
-    ('clipr', '0.8.0', {
-        'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9'],
-    }),
-    ('ini', '0.3.1', {
-        'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813'],
-    }),
-    ('gitcreds', '0.1.2', {
-        'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'],
-    }),
-    ('gh', '1.4.1', {
-        'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af'],
-    }),
-    ('credentials', '2.0.2', {
-        'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a'],
-    }),
-    ('zip', '2.3.1', {
-        'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'],
-    }),
-    ('gert', '2.1.4', {
-        'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d'],
-    }),
-    ('usethis', '3.0.0', {
-        'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5'],
-    }),
-    ('devtools', '2.4.5', {
-        'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'],
-    }),
+    ('rlang', '1.1.4', {'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1']}),
+    ('Rcpp', '1.0.13-1', {'checksums': ['1d1fc623d27082b5749f9584a9204de410134b6412a192157a3e42e2ba43969a']}),
+    ('R6', '2.5.1', {'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48']}),
+    ('cli', '3.6.3', {'checksums': ['4295085f11221c54b1dd2b1d39a675a85dfd9f900294297567e1d36f65ac4841']}),
+    ('base64enc', '0.1-3', {'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d']}),
+    ('rprojroot', '2.0.4', {'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99']}),
+    ('xfun', '0.49', {'checksums': ['cd2102895cca4ba8b81601eab0b724ad4c7ad15485720e427fc021b950b1b375']}),
+    ('commonmark', '1.9.2', {'checksums': ['1d6adcfbe8e2b8f7302bef80e2364ba4f186238e4e5593511908ade57eb486eb']}),
+    ('highr', '0.11', {'checksums': ['e90d14284001963325a84a9dbeef029609d52515da8d65c87ae61be21b7fe0a7']}),
+    ('digest', '0.6.37', {'checksums': ['82c4d149994b8a4a9af930f5a8e47420829935abed41f3f9030e94b6a48f0321']}),
+    ('desc', '1.4.3', {'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26']}),
+    ('ellipsis', '0.3.2', {'checksums': ['a90266e5eb59c7f419774d5c6d6bd5e09701a26c9218c5933c9bce6765aa1558']}),
+    ('prettyunits', '1.2.0', {'checksums': ['f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea']}),
+    ('crayon', '1.5.3', {'checksums': ['3e74a0685541efb5ea763b92cfd5c859df71c46b0605967a0b5dbb7326e9da69']}),
+    ('stringi', '1.8.4', {'checksums': ['c219f8f64d1a2bfd4ca9528452d44d30db1899af14f4b9ef248412443bc669f3']}),
+    ('magrittr', '2.0.3', {'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2']}),
+    ('evaluate', '1.0.1', {'checksums': ['436cc3e55b53e3c618b2f31324840875b5d66076c737af6fb31c650c783171e2']}),
+    ('ps', '1.8.1', {'checksums': ['62a03b7f50173a1d12f37a09c2049772080b26fe180724ab8a8d6e73d4a80781']}),
+    ('processx', '3.8.4', {'checksums': ['6627672d7fb109f37dc1d0eaef913f4cfc7ad8ac807abf0397e6d37753b1e70b']}),
+    ('callr', '3.7.6', {'checksums': ['e4bce367e869e42eaeea05566d2033d8cee2103179b11cd9a401440b58a351f8']}),
+    ('pkgbuild', '1.4.5', {'checksums': ['21de442b02b8b4c07f5e0ca712a4a12e98305def01c58b4333a3348709e41a00']}),
+    ('fs', '1.6.5', {'checksums': ['0e3b4d40215bee77b52d158a2e4967f4408721576aaf39bc6a77024522c70b34']}),
+    ('utf8', '1.2.4', {'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d']}),
+    ('fansi', '1.0.6', {'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863']}),
+    ('pkgconfig', '2.0.3', {'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850']}),
+    ('withr', '3.0.2', {'checksums': ['0a3a05f493d275cca4bf13c8c1b95a1a4eed7f83b2493f41fde02ce3fc92c1a3']}),
+    ('glue', '1.8.0', {'checksums': ['c86f364ba899b8662f5da3e1a75f43ae081ab04e0d51171d052356e7ee4b72a0']}),
+    ('rstudioapi', '0.17.1', {'checksums': ['617ef983c8960673131fb92203fc3c64a7d3787e7479d42daba7acc49b5b3909']}),
+    ('lifecycle', '1.0.4', {'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc']}),
+    ('pkgload', '1.4.0', {'checksums': ['09e4885e9cc25af29063a525da0b2ac9dd66fc7a95ea085bf5060312e3a67549']}),
+    ('fastmap', '1.2.0', {'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246']}),
+    ('htmltools', '0.5.8.1', {'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176']}),
+    ('yaml', '2.3.10', {'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d']}),
+    ('knitr', '1.49', {'checksums': ['2952c579654649387e0020f4033a70ea838e55ab04a188e0baf592f09e98a2d3']}),
+    ('mime', '0.12', {'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849']}),
+    ('praise', '1.0.0', {'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd']}),
+    ('brio', '1.1.5', {'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8']}),
+    ('jsonlite', '1.8.9', {'checksums': ['89f130e0e1163328c01decd54e7712b5ebf3d0a667da0052833722cb9a6e90b0']}),
+    ('vctrs', '0.6.5', {'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402']}),
+    ('stringr', '1.5.1', {'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de']}),
+    ('pillar', '1.9.0', {'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc']}),
+    ('tibble', '3.2.1', {'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131']}),
+    ('diffobj', '0.3.5', {'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60']}),
+    ('rematch2', '2.1.2', {'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb']}),
+    ('waldo', '0.6.1', {'checksums': ['c9c3f3732a2fe7008735c8bff7b0139489132a5a8b1b8df96768fbe9dd1e76c9']}),
+    ('testthat', '3.2.1.1', {'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7']}),
+    ('xml2', '1.3.6', {'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f']}),
+    ('curl', '6.0.1', {'checksums': ['841c90bed7745f972ab524e542b1f5c3632767e3d521c163d483e436f3d42362']}),
+    ('sys', '3.4.3', {'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a']}),
+    ('askpass', '1.2.1', {'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd']}),
+    ('openssl', '2.2.2', {'checksums': ['0cb45f413e8ce4664f79a20768fd7853c538ddb87f33819b5e7a6527ae828c96']}),
+    ('httr', '1.4.7', {'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a']}),
+    ('jquerylib', '0.1.4', {'checksums': ['f0bcc11dcde3a6ff180277e45c24642d3da3c8690900e38f44495efbc9064411']}),
+    ('rappdirs', '0.3.3', {'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184']}),
+    ('sass', '0.4.9', {'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2']}),
+    ('purrr', '1.0.2', {'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63']}),
+    ('cachem', '1.1.0', {'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21']}),
+    ('memoise', '2.0.1', {'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb']}),
+    ('bslib', '0.8.0', {'checksums': ['fd182ddb1b128691d2b0c12882361732a23d451dbf4052ba70b11257e8d44b03']}),
+    ('fontawesome', '0.5.3', {'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f']}),
+    ('tinytex', '0.54', {'checksums': ['fa5148e2a3813be5e174df3bae0401d282d7f7eb9fd3b173bc196fb9be90fffa']}),
+    ('rmarkdown', '2.29', {'checksums': ['6662ac85316c869caad6e3b95468cad97f6eef106d47b066db8d40c05a490928']}),
+    ('downlit', '0.4.4', {'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828']}),
+    ('cpp11', '0.5.0', {'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3']}),
+    ('systemfonts', '1.1.0', {'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644']}),
+    ('textshaping', '0.4.0', {'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a']}),
+    ('ragg', '1.3.3', {'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af']}),
+    ('whisker', '0.4.1', {'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc']}),
+    ('httr2', '1.0.6', {'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5']}),
+    ('pkgdown', '2.1.1', {'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde']}),
+    ('htmlwidgets', '1.6.4', {'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0']}),
+    ('profvis', '0.4.0', {'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4']}),
+    ('urlchecker', '1.0.1', {'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318']}),
+    ('later', '1.3.2', {'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e']}),
+    ('promises', '1.3.0', {'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3']}),
+    ('xtable', '1.8-4', {'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c']}),
+    ('httpuv', '1.6.15', {'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0']}),
+    ('sourcetools', '0.1.7-1', {'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1']}),
+    ('shiny', '1.9.1', {'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3']}),
+    ('miniUI', '0.1.1.1', {'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0']}),
+    ('brew', '1.0-10', {'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f']}),
+    ('roxygen2', '7.3.2', {'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c']}),
+    ('rversions', '2.1.2', {'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160']}),
+    ('sessioninfo', '1.2.2', {'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb']}),
+    ('xopen', '1.0.1', {'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec']}),
+    ('rcmdcheck', '1.4.0', {'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0']}),
+    ('remotes', '2.5.0', {'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c']}),
+    ('clipr', '0.8.0', {'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9']}),
+    ('ini', '0.3.1', {'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813']}),
+    ('gitcreds', '0.1.2', {'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d']}),
+    ('gh', '1.4.1', {'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af']}),
+    ('credentials', '2.0.2', {'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a']}),
+    ('zip', '2.3.1', {'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f']}),
+    ('gert', '2.1.4', {'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d']}),
+    ('usethis', '3.0.0', {'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5']}),
+    ('devtools', '2.4.5', {'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b']}),
 ]
 
 moduleclass = 'lang'
Diff against R-4.4.1-gfbf-2023b.eb

easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
index 09a46feeaa..7a14eff140 100644
--- a/easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
@@ -1,69 +1,60 @@
 name = 'R'
-version = '4.4.1'
+version = '4.4.2'
 
 homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['b4cb675deaaeb7299d3b265d218cde43f192951ce5b89b7bb1a5148a36b2d94d']
+checksums = ['1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec']
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('Autotools', '20220317'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20231019'),
-    ('Mesa', '23.1.9'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
-    ('ncurses', '6.4'),
+    ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.4'),
-    ('zlib', '1.2.13'),
-    ('SQLite', '3.43.1'),
-    ('PCRE2', '10.42'),
-    ('libpng', '1.6.40'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '11', '', SYSTEM),
-    ('libgit2', '1.7.2'),
-    ('OpenSSL', '1.1', '', SYSTEM),
-    ('cURL', '8.3.0'),
-    ('Tk', '8.6.13'),  # for tcltk
-    ('HarfBuzz', '8.2.2'),  # for textshaping
-    ('FriBidi', '1.0.13'),  # for textshaping
-
+    ('XZ', '5.6.3'),
+    ('zlib', '1.3.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '23.0.2', '', SYSTEM),
+    ('libgit2', '1.9.1'),
+    ('OpenSSL', '3', '', SYSTEM),
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
 # Adding it to FLIBS makes sure it is present when needed.
 preconfigopts = 'export FLIBS="$FLIBS -lm" && '
+configopts = "--with-pic --enable-threads --enable-R-shlib --with-recommended-packages=no"
 
-configopts = "--with-pic --enable-threads --enable-R-shlib"
-# some recommended packages may fail in a parallel build (e.g. Matrix), and
-# we're installing them anyway below
-configopts += " --with-recommended-packages=no"
 
 exts_default_options = {
-    'source_urls': [
-        'https://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
-        'https://cran.r-project.org/src/contrib/',  # current version of packages
-        'https://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
-    ],
     'source_tmpl': '%(name)s_%(version)s.tar.gz',
+    'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s',
+                    'https://cran.r-project.org/src/contrib/',
+                    'https://cran.freestatistics.org/src/contrib'],
 }
 
 # !! order of packages is important !!
-# packages updated on 24 June 2024
+# packages updated on 24 November 2024
 exts_list = [
-    # include packages that are part of the base installation of R,
-    # both to make sure they are available (via sanity check),
-    # and to be able to pass the check for required dependencies when installing extensions in parallel
     'base',
     'compiler',
     'datasets',
@@ -78,294 +69,102 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.4', {
-        'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1'],
-    }),
-    ('Rcpp', '1.0.12', {
-        'checksums': ['0c7359cc43beee02761aa3df2baccede1182d29d28c9cd49964b609305062bd0'],
-    }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
-    }),
-    ('cli', '3.6.3', {
-        'checksums': ['4295085f11221c54b1dd2b1d39a675a85dfd9f900294297567e1d36f65ac4841'],
-    }),
-    ('base64enc', '0.1-3', {
-        'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
-    }),
-    ('rprojroot', '2.0.4', {
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+    ('pkgload', '1.4.0', {'checksums': ['09e4885e9cc25af29063a525da0b2ac9dd66fc7a95ea085bf5060312e3a67549']}),
+    ('fastmap', '1.2.0', {'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246']}),
+    ('htmltools', '0.5.8.1', {'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176']}),
+    ('yaml', '2.3.10', {'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d']}),
+    ('knitr', '1.49', {'checksums': ['2952c579654649387e0020f4033a70ea838e55ab04a188e0baf592f09e98a2d3']}),
+    ('mime', '0.12', {'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849']}),
+    ('praise', '1.0.0', {'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd']}),
+    ('brio', '1.1.5', {'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8']}),
+    ('jsonlite', '1.8.9', {'checksums': ['89f130e0e1163328c01decd54e7712b5ebf3d0a667da0052833722cb9a6e90b0']}),
+    ('vctrs', '0.6.5', {'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402']}),
+    ('stringr', '1.5.1', {'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de']}),
+    ('pillar', '1.9.0', {'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc']}),
+    ('tibble', '3.2.1', {'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131']}),
+    ('diffobj', '0.3.5', {'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60']}),
+    ('rematch2', '2.1.2', {'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb']}),
+    ('waldo', '0.6.1', {'checksums': ['c9c3f3732a2fe7008735c8bff7b0139489132a5a8b1b8df96768fbe9dd1e76c9']}),
+    ('testthat', '3.2.1.1', {'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7']}),
+    ('xml2', '1.3.6', {'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f']}),
+    ('curl', '6.0.1', {'checksums': ['841c90bed7745f972ab524e542b1f5c3632767e3d521c163d483e436f3d42362']}),
+    ('sys', '3.4.3', {'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a']}),
+    ('askpass', '1.2.1', {'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd']}),
+    ('openssl', '2.2.2', {'checksums': ['0cb45f413e8ce4664f79a20768fd7853c538ddb87f33819b5e7a6527ae828c96']}),
+    ('httr', '1.4.7', {'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a']}),
+    ('jquerylib', '0.1.4', {'checksums': ['f0bcc11dcde3a6ff180277e45c24642d3da3c8690900e38f44495efbc9064411']}),
+    ('rappdirs', '0.3.3', {'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184']}),
+    ('sass', '0.4.9', {'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2']}),
+    ('purrr', '1.0.2', {'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63']}),
+    ('cachem', '1.1.0', {'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21']}),
+    ('memoise', '2.0.1', {'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb']}),
+    ('bslib', '0.8.0', {'checksums': ['fd182ddb1b128691d2b0c12882361732a23d451dbf4052ba70b11257e8d44b03']}),
+    ('fontawesome', '0.5.3', {'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f']}),
+    ('tinytex', '0.54', {'checksums': ['fa5148e2a3813be5e174df3bae0401d282d7f7eb9fd3b173bc196fb9be90fffa']}),
+    ('rmarkdown', '2.29', {'checksums': ['6662ac85316c869caad6e3b95468cad97f6eef106d47b066db8d40c05a490928']}),
+    ('downlit', '0.4.4', {'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828']}),
+    ('cpp11', '0.5.0', {'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3']}),
+    ('systemfonts', '1.1.0', {'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644']}),
+    ('textshaping', '0.4.0', {'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a']}),
+    ('ragg', '1.3.3', {'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af']}),
+    ('whisker', '0.4.1', {'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc']}),
+    ('httr2', '1.0.6', {'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5']}),
+    ('pkgdown', '2.1.1', {'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde']}),
+    ('htmlwidgets', '1.6.4', {'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0']}),
+    ('profvis', '0.4.0', {'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4']}),
+    ('urlchecker', '1.0.1', {'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318']}),
+    ('later', '1.3.2', {'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e']}),
+    ('promises', '1.3.0', {'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3']}),
+    ('xtable', '1.8-4', {'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c']}),
+    ('httpuv', '1.6.15', {'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0']}),
+    ('sourcetools', '0.1.7-1', {'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1']}),
+    ('shiny', '1.9.1', {'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3']}),
+    ('miniUI', '0.1.1.1', {'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0']}),
+    ('brew', '1.0-10', {'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f']}),
+    ('roxygen2', '7.3.2', {'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c']}),
+    ('rversions', '2.1.2', {'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160']}),
+    ('sessioninfo', '1.2.2', {'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb']}),
+    ('xopen', '1.0.1', {'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec']}),
+    ('rcmdcheck', '1.4.0', {'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0']}),
+    ('remotes', '2.5.0', {'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c']}),
+    ('clipr', '0.8.0', {'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9']}),
+    ('ini', '0.3.1', {'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813']}),
+    ('gitcreds', '0.1.2', {'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d']}),
+    ('gh', '1.4.1', {'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af']}),
+    ('credentials', '2.0.2', {'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a']}),
+    ('zip', '2.3.1', {'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f']}),
+    ('gert', '2.1.4', {'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d']}),
+    ('usethis', '3.0.0', {'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5']}),
+    ('devtools', '2.4.5', {'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b']}),
 ]
 
 moduleclass = 'lang'
Diff against R-4.3.3-gfbf-2023b.eb

easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
index de0461be65..7a14eff140 100644
--- a/easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2025a.eb
@@ -1,72 +1,60 @@
 name = 'R'
-version = '4.3.3'
+version = '4.4.2'
 
 homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
-patches = ['R-4.x_fix-CVE-2024-27322.patch']
-checksums = [
-    {'R-4.3.3.tar.gz': '80851231393b85bf3877ee9e39b282e750ed864c5ec60cbd68e6e139f0520330'},
-    {'R-4.x_fix-CVE-2024-27322.patch': 'd8560e15c3c5716f99e852541901014d406f2a73136b0b74f11ba529f7a7b00d'},
-]
+checksums = ['1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec']
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('Autotools', '20220317'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20231019'),
-    ('Mesa', '23.1.9'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
-    ('ncurses', '6.4'),
+    ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.4'),
-    ('zlib', '1.2.13'),
-    ('SQLite', '3.43.1'),
-    ('PCRE2', '10.42'),
-    ('libpng', '1.6.40'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '11', '', SYSTEM),
-    ('libgit2', '1.7.2'),
-    ('OpenSSL', '1.1', '', SYSTEM),
-    ('cURL', '8.3.0'),
-    ('Tk', '8.6.13'),  # for tcltk
-    ('HarfBuzz', '8.2.2'),  # for textshaping
-    ('FriBidi', '1.0.13'),  # for textshaping
+    ('XZ', '5.6.3'),
+    ('zlib', '1.3.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '23.0.2', '', SYSTEM),
+    ('libgit2', '1.9.1'),
+    ('OpenSSL', '3', '', SYSTEM),
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
 # Adding it to FLIBS makes sure it is present when needed.
 preconfigopts = 'export FLIBS="$FLIBS -lm" && '
+configopts = "--with-pic --enable-threads --enable-R-shlib --with-recommended-packages=no"
 
-configopts = "--with-pic --enable-threads --enable-R-shlib"
-# some recommended packages may fail in a parallel build (e.g. Matrix), and
-# we're installing them anyway below
-configopts += " --with-recommended-packages=no"
 
 exts_default_options = {
-    'source_urls': [
-        'https://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
-        'https://cran.r-project.org/src/contrib/',  # current version of packages
-        'https://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
-    ],
     'source_tmpl': '%(name)s_%(version)s.tar.gz',
+    'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s',
+                    'https://cran.r-project.org/src/contrib/',
+                    'https://cran.freestatistics.org/src/contrib'],
 }
 
 # !! order of packages is important !!
-# packages updated on 4th March 2024
+# packages updated on 24 November 2024
 exts_list = [
-    # include packages that are part of the base installation of R,
-    # both to make sure they are available (via sanity check),
-    # and to be able to pass the check for required dependencies when installing extensions in parallel
     'base',
     'compiler',
     'datasets',
@@ -81,294 +69,102 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.3', {
-        'checksums': ['24a3424b5dc2c4bd3e5f7c0b54fbe1355028e329181b2d41f4464c8ade28bf0a'],
-    }),
-    ('Rcpp', '1.0.12', {
-        'checksums': ['0c7359cc43beee02761aa3df2baccede1182d29d28c9cd49964b609305062bd0'],
-    }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
-    }),
-    ('cli', '3.6.2', {
-        'checksums': ['4c0749e3711b2b6ae90fd992784303bc8d98039599cac1deb397239a7018e151'],
-    }),
-    ('base64enc', '0.1-3', {
-        'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
-    }),
-    ('rprojroot', '2.0.4', {
-        'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'],
-    }),
-    ('xfun', '0.42', {
-        'checksums': ['07bbfaed212ba1fcb9367624e8bc4936a7884e30e0efc561199acd0fcba5750a'],
-    }),
-    ('commonmark', '1.9.1', {
-        'checksums': ['9517a13f4ce4a99bb157493453b04419b222cb65a9471cd3b11e5045ac0db53b'],
-    }),
-    ('highr', '0.10', {
-        'checksums': ['ec55bc1ff66390ed66806dc2a7b6c17dbfd089b3d73fe2e369017f8cb4bc347b'],
-    }),
-    ('digest', '0.6.34', {
-        'checksums': ['0b737552932f165d4158ac94631f90abfb02c510df14577d7aa900c8fd3d44d9'],
-    }),
-    ('desc', '1.4.3', {
-        'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26'],
-    }),
-    ('ellipsis', '0.3.2', {
-        'checksums': ['a90266e5eb59c7f419774d5c6d6bd5e09701a26c9218c5933c9bce6765aa1558'],
-    }),
-    ('prettyunits', '1.2.0', {
-        'checksums': ['f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea'],
-    }),
-    ('crayon', '1.5.2', {
-        'checksums': ['70a9a505b5b3c0ee6682ad8b965e28b7e24d9f942160d0a2bad18eec22b45a7a'],
-    }),
-    ('stringi', '1.8.3', {
-        'checksums': ['1602be8edd1dd8ac5a836f4077cbc9d6a312ca4b2c594a0486370e8c1e314925'],
-    }),
-    ('magrittr', '2.0.3', {
-        'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'],
-    }),
-    ('evaluate', '0.23', {
-        'checksums': ['c9cf9c37502b8fbfa78e4eb96b8c3d1789060e49505c86c07cb7476da804a45c'],
-    }),
-    ('ps', '1.7.6', {
-        'checksums': ['52c35ffc3d1e1d984a94c7bbd671ef4ad70946990cbcd80e814e17937b056dd2'],
-    }),
-    ('processx', '3.8.3', {
-        'checksums': ['1ad8c51482b89702fbbb6621b1a179c1ae67b78388b8fd9c841bbc8cf035d831'],
-    }),
-    ('callr', '3.7.5', {
-        'checksums': ['18a11e8f7324d5b013149af69a32784aea7433863492aaabccd8d227b73b472c'],
-    }),
-    ('pkgbuild', '1.4.3', {
-        'checksums': ['1583edb56c0afab6f99d0dd2235fd45999461f89e8ca50bc7c0b74211f109165'],
-    }),
-    ('fs', '1.6.3', {
-        'checksums': ['fa82061e50d7a4d94b7e404f9f2b699e75ae8fbfb575fabdfc2c39f536c0f971'],
-    }),
-    ('utf8', '1.2.4', {
-        'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'],
-    }),
-    ('fansi', '1.0.6', {
-        'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'],
-    }),
-    ('pkgconfig', '2.0.3', {
-        'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850'],
-    }),
-    ('withr', '3.0.0', {
-        'checksums': ['8c78eede6d0e648c23d38a6695f642aed2819ef708239d00b36cbc15eabbe0e7'],
-    }),
-    ('glue', '1.7.0', {
-        'checksums': ['1af51b51f52c1aeb3bfe9349f55896dd78b5542ffdd5654e432e4d646e4a86dc'],
-    }),
-    ('rstudioapi', '0.15.0', {
-        'checksums': ['935bc81dca37d3d6e77982bfe6e7fbd779e8606e5b7e00d0ba4c80fec0416ccf'],
-    }),
-    ('brio', '1.1.4', {
-        'checksums': ['0cbbf38948682b2435eea69b04be59187b149183dc7562df71dc0d3e260e18e8'],
-    }),
-    ('pkgload', '1.3.4', {
-        'checksums': ['60b04b948cda4dc56257b1e89f9b0a4b1273cacecdb2bd995d66dd76e89926ce'],
-    }),
-    ('fastmap', '1.1.1', {
-        'checksums': ['3623809dd016ae8abd235200ba7834effc4b916915a059deb76044137c5c7173'],
-    }),
-    ('htmltools', '0.5.7', {
-        'checksums': ['ecb0d82619063f49e4d001c44fcc1b811a06928fd66c2bb8c86632798d98b386'],
-    }),
-    ('yaml', '2.3.8', {
-        'checksums': ['9ed079e2159cae214f3fefcbc4c8eb3b888ceabe902350adbdb1d181eda23fd8'],
-    }),
-    ('knitr', '1.45', {
-        'checksums': ['ee2edea53bc53efa51d131ab5a0b0c829c0f950b79d3c6ee34705354bf7584fb'],
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+    ('cpp11', '0.5.0', {'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3']}),
+    ('systemfonts', '1.1.0', {'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644']}),
+    ('textshaping', '0.4.0', {'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a']}),
+    ('ragg', '1.3.3', {'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af']}),
+    ('whisker', '0.4.1', {'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc']}),
+    ('httr2', '1.0.6', {'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5']}),
+    ('pkgdown', '2.1.1', {'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde']}),
+    ('htmlwidgets', '1.6.4', {'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0']}),
+    ('profvis', '0.4.0', {'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4']}),
+    ('urlchecker', '1.0.1', {'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318']}),
+    ('later', '1.3.2', {'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e']}),
+    ('promises', '1.3.0', {'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3']}),
+    ('xtable', '1.8-4', {'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c']}),
+    ('httpuv', '1.6.15', {'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0']}),
+    ('sourcetools', '0.1.7-1', {'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1']}),
+    ('shiny', '1.9.1', {'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3']}),
+    ('miniUI', '0.1.1.1', {'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0']}),
+    ('brew', '1.0-10', {'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f']}),
+    ('roxygen2', '7.3.2', {'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c']}),
+    ('rversions', '2.1.2', {'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160']}),
+    ('sessioninfo', '1.2.2', {'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb']}),
+    ('xopen', '1.0.1', {'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec']}),
+    ('rcmdcheck', '1.4.0', {'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0']}),
+    ('remotes', '2.5.0', {'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c']}),
+    ('clipr', '0.8.0', {'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9']}),
+    ('ini', '0.3.1', {'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813']}),
+    ('gitcreds', '0.1.2', {'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d']}),
+    ('gh', '1.4.1', {'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af']}),
+    ('credentials', '2.0.2', {'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a']}),
+    ('zip', '2.3.1', {'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f']}),
+    ('gert', '2.1.4', {'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d']}),
+    ('usethis', '3.0.0', {'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5']}),
+    ('devtools', '2.4.5', {'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b']}),
 ]
 
 moduleclass = 'lang'

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ekieffer commented Jul 31, 2025

Test report by @ekieffer
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
mel0026 - Linux Rocky Linux 8.10, x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.6.8
See https://gist.github.com/ekieffer/77be7642f19c4a60f9c10f029460a7fd for a full test report.

@Thyre Thyre added the 2025a issues & PRs related to 2025a common toolchains label Aug 1, 2025
@stefan-wolfsheimer stefan-wolfsheimer mentioned this pull request Aug 8, 2025
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@maxim-masterov maxim-masterov mentioned this pull request Aug 13, 2025
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Thyre commented Aug 18, 2025

LLVM, Mesa & lit are also in #23144, with the main difference being LLVM & Mesa having a newer version.

For LLVM, newer patch versions are definitely preferred. Mesa 25.x has some noticeable changes causing issues in the other PR, but I still think this is the way forward. We just need another easyblock PR to handle these changes.

@Thyre Thyre mentioned this pull request Aug 18, 2025
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@casparvl casparvl mentioned this pull request Aug 28, 2025
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casparvl commented Aug 28, 2025

@ekieffer : I agree with @Thyre . I think the way forward here is as follows:

  1. Strip this down to a PR for R only (that's typically complex enough, and we don't want that to hold back other easyconfigs such as libGLU), and change the Mesa dependency for that R to 25.1.3 (i.e. from {vis}[GCCcore/14.2.0] LLVM v20.1.7, Mesa v25.1.3, lit v18.1.8, ... #23144 ).
  2. I've created a separate PR for libGLU dependendent on Mesa 25.1.3 myself {vis}[GCCcore/14.2.0] libGLU v9.0.3 #23756 , since other PRs depended on your version. I will redirect those PRs to use my version.

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ekieffer commented Sep 1, 2025

Ok sure. I will strip down the PR and just leave R with Mesa 25.1.3.

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ekieffer commented Sep 2, 2025

Test report by @ekieffer
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
mel0425 - Linux Rocky Linux 8.10, x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.6.8
See https://gist.github.com/ekieffer/1db174c10eb7259fc7f3b61b0d4edcf0 for a full test report.

@ekieffer ekieffer changed the title {vis}[GCCcore/14.2.0] R v4.4.2, LLVM v20.1.5, Mesa v24.1.3, ... {vis}[GCCcore/14.2.0] R v4.4.2 Sep 2, 2025
@smoretti smoretti mentioned this pull request Oct 3, 2025
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@Thyre Thyre added the stale label Dec 15, 2025
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Thyre commented Dec 15, 2025

We have R v4.5.1 merged by now (see #24107), so we can probably go ahead and close this PR.
Sorry for not getting back to this PR @ekieffer.

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ekieffer commented Jan 19, 2026

More recent R version has been added to the develop. Closing this pull request as it is not needed anymore.

@ekieffer ekieffer closed this Jan 19, 2026
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