{lang}[gfbf/2025a] R v4.5.1 by SIB-software · Pull Request #24107 · easybuilders/easybuild-easyconfigs

SIB-software · 2025-10-03T13:28:18Z

(created using eb --new-pr)

github-actions · 2025-10-03T13:28:47Z

Updated software `R-4.5.1-gfbf-2025a.eb`

Diff against R-4.4.2-gfbf-2024a.eb

easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
index b0294d69ae..d0473f88b1 100644
--- a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb
+++ b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
@@ -1,43 +1,43 @@
 name = 'R'
-version = '4.4.2'
+version = '4.5.1'
 
 homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2024a'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec']
+checksums = ['b42a7921400386645b10105b91c68728787db5c4c83c9f6c30acdce632e1bb70']
 
 builddependencies = [
-    ('pkgconf', '2.2.0'),
-    ('Autotools', '20231222'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20240607'),
-    ('Mesa', '24.1.3'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
     ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.5'),
+    ('XZ', '5.6.3'),
     ('zlib', '1.3.1'),
-    ('SQLite', '3.45.3'),
-    ('PCRE2', '10.43'),
-    ('libpng', '1.6.43'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '17', '', SYSTEM),
-    ('libgit2', '1.8.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('libwebp', '1.5.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '21', '', SYSTEM),
+    ('libgit2', '1.9.1'),
     ('OpenSSL', '3', '', SYSTEM),
-    ('cURL', '8.7.1'),
-    ('Tk', '8.6.14'),  # for tcltk
-    ('HarfBuzz', '9.0.0'),  # for textshaping
-    ('FriBidi', '1.0.15'),  # for textshaping
-
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
@@ -59,7 +59,7 @@ exts_default_options = {
 }
 
 # !! order of packages is important !!
-# packages updated on 24 November 2024
+# packages updated on 19 September 2025
 exts_list = [
     'base',
     'compiler',
@@ -75,29 +75,29 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.4', {
-        'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1'],
+    ('rlang', '1.1.6', {
+        'checksums': ['18544c876f4e18ec554edecc308362a52fbc7e0805c4794cf59bcc4d0b57f330'],
     }),
-    ('Rcpp', '1.0.13-1', {
-        'checksums': ['1d1fc623d27082b5749f9584a9204de410134b6412a192157a3e42e2ba43969a'],
+    ('Rcpp', '1.1.0', {
+        'checksums': ['84211c2520ba68c839b2e75761e97afc90baeebccbaf216ac8534fa2076cfb4d'],
     }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
+    ('R6', '2.6.1', {
+        'checksums': ['59c6eba8b1b912eb7e104f65053235604be853425ee67c152ac4e86a1f2073b4'],
     }),
-    ('cli', '3.6.3', {
-        'checksums': ['4295085f11221c54b1dd2b1d39a675a85dfd9f900294297567e1d36f65ac4841'],
+    ('cli', '3.6.5', {
+        'checksums': ['8ebe3146e66a285d8ad6ddcff87e2a9790ea7c9cdfce7fdd8bf13095fa459679'],
     }),
     ('base64enc', '0.1-3', {
         'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
     }),
-    ('rprojroot', '2.0.4', {
-        'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'],
+    ('rprojroot', '2.1.1', {
+        'checksums': ['473989bbef45fd9cd68f68dc317b14c9f42de5cea4b55fd6ba9011f25e0517e9'],
     }),
-    ('xfun', '0.49', {
-        'checksums': ['cd2102895cca4ba8b81601eab0b724ad4c7ad15485720e427fc021b950b1b375'],
+    ('xfun', '0.53', {
+        'checksums': ['9e5936d3a2ba027c1c3dc5b609cf94f982d6e3d785ced70fed9f76ed7ac3fba6'],
     }),
-    ('commonmark', '1.9.2', {
-        'checksums': ['1d6adcfbe8e2b8f7302bef80e2364ba4f186238e4e5593511908ade57eb486eb'],
+    ('commonmark', '2.0.0', {
+        'checksums': ['7f47d7f9f4ff5d1e2a73a69f6e233d2ddbafae97944ddf664a6000aa94936904'],
     }),
     ('highr', '0.11', {
         'checksums': ['e90d14284001963325a84a9dbeef029609d52515da8d65c87ae61be21b7fe0a7'],
@@ -117,32 +117,32 @@ exts_list = [
     ('crayon', '1.5.3', {
         'checksums': ['3e74a0685541efb5ea763b92cfd5c859df71c46b0605967a0b5dbb7326e9da69'],
     }),
-    ('stringi', '1.8.4', {
-        'checksums': ['c219f8f64d1a2bfd4ca9528452d44d30db1899af14f4b9ef248412443bc669f3'],
+    ('stringi', '1.8.7', {
+        'checksums': ['0526decdcd41b7c42278aca96945394c2cb66ba6fdd47fd917b5d3d38ed5c8c6'],
     }),
-    ('magrittr', '2.0.3', {
-        'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'],
+    ('magrittr', '2.0.4', {
+        'checksums': ['6aba790c40de70d8fb4d2db4bebb377418971761b0da7df2141b5d4ad95981f3'],
     }),
-    ('evaluate', '1.0.1', {
-        'checksums': ['436cc3e55b53e3c618b2f31324840875b5d66076c737af6fb31c650c783171e2'],
+    ('evaluate', '1.0.5', {
+        'checksums': ['47aac79f889a828a5f8b4756cb972d7c2966bb984cbae17a4bd2389a73270794'],
     }),
-    ('ps', '1.8.1', {
-        'checksums': ['62a03b7f50173a1d12f37a09c2049772080b26fe180724ab8a8d6e73d4a80781'],
+    ('ps', '1.9.1', {
+        'checksums': ['6f093c0beb87684afe098b71e16593366210d5d38992a7c3740ca1075da4df7d'],
     }),
-    ('processx', '3.8.4', {
-        'checksums': ['6627672d7fb109f37dc1d0eaef913f4cfc7ad8ac807abf0397e6d37753b1e70b'],
+    ('processx', '3.8.6', {
+        'checksums': ['c5f1cafd0e4351caf512298888574a6b3bdd1b4d0fb42ef2834c7bf955734221'],
     }),
     ('callr', '3.7.6', {
         'checksums': ['e4bce367e869e42eaeea05566d2033d8cee2103179b11cd9a401440b58a351f8'],
     }),
-    ('pkgbuild', '1.4.5', {
-        'checksums': ['21de442b02b8b4c07f5e0ca712a4a12e98305def01c58b4333a3348709e41a00'],
+    ('pkgbuild', '1.4.8', {
+        'checksums': ['2e4259202ce90fc452f31ff36cfe14ff21a38e9fd71c3015e25018b9079924cb'],
     }),
-    ('fs', '1.6.5', {
-        'checksums': ['0e3b4d40215bee77b52d158a2e4967f4408721576aaf39bc6a77024522c70b34'],
+    ('fs', '1.6.6', {
+        'checksums': ['57d3a0844e2fec28e6fe9901d18e07d32a437dfe43c4b547757eb07360f5850a'],
     }),
-    ('utf8', '1.2.4', {
-        'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'],
+    ('utf8', '1.2.6', {
+        'checksums': ['4589f8b72291329e70b7f3a8c20f2feb4e7764eebad2e6976bc9a3eee7686ce9'],
     }),
     ('fansi', '1.0.6', {
         'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'],
@@ -162,8 +162,8 @@ exts_list = [
     ('lifecycle', '1.0.4', {
         'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
     }),
-    ('pkgload', '1.4.0', {
-        'checksums': ['09e4885e9cc25af29063a525da0b2ac9dd66fc7a95ea085bf5060312e3a67549'],
+    ('pkgload', '1.4.1', {
+        'checksums': ['51f370165c124904b907e78f6f0192b88ce2df5a93835cddd11565a328709976'],
     }),
     ('fastmap', '1.2.0', {
         'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246'],
@@ -174,11 +174,11 @@ exts_list = [
     ('yaml', '2.3.10', {
         'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d'],
     }),
-    ('knitr', '1.49', {
-        'checksums': ['2952c579654649387e0020f4033a70ea838e55ab04a188e0baf592f09e98a2d3'],
+    ('knitr', '1.50', {
+        'checksums': ['105f5e8420ad766c94b96a787cb3ce368d12ef8702f867d0515c4fce728e2f41'],
     }),
-    ('mime', '0.12', {
-        'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'],
+    ('mime', '0.13', {
+        'checksums': ['7132834cf3c3388eff12bad376d69fbcf8275acc37d36c290e59174fe3c7f3eb'],
     }),
     ('praise', '1.0.0', {
         'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'],
@@ -186,38 +186,38 @@ exts_list = [
     ('brio', '1.1.5', {
         'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8'],
     }),
-    ('jsonlite', '1.8.9', {
-        'checksums': ['89f130e0e1163328c01decd54e7712b5ebf3d0a667da0052833722cb9a6e90b0'],
+    ('jsonlite', '2.0.0', {
+        'checksums': ['75eb910c82b350ec33f094779da0f87bff154c232e4ae39c9896a9b89f3ac82d'],
     }),
     ('vctrs', '0.6.5', {
         'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402'],
     }),
-    ('stringr', '1.5.1', {
-        'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de'],
+    ('stringr', '1.5.2', {
+        'checksums': ['d410ecb4f19c3fd07bb32142d5d0286e2f19f1533ba86243776326a4e73837a3'],
     }),
-    ('pillar', '1.9.0', {
-        'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc'],
+    ('pillar', '1.11.1', {
+        'checksums': ['056ce154238c9b5b8d5dcbcb52e1bc51d33870ce08c8a9ca9496478bd59f4653'],
     }),
-    ('tibble', '3.2.1', {
-        'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131'],
+    ('tibble', '3.3.0', {
+        'checksums': ['7f4c439f11b1aca4a45923d8d76f90fbab4e01acf0ba7ad0c38c3a7f22fee192'],
     }),
-    ('diffobj', '0.3.5', {
-        'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60'],
+    ('diffobj', '0.3.6', {
+        'checksums': ['b316d9c37177b19ce7f39ba32872d09ab600909709fd313c1e39398a4ae51287'],
     }),
     ('rematch2', '2.1.2', {
         'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb'],
     }),
-    ('waldo', '0.6.1', {
-        'checksums': ['c9c3f3732a2fe7008735c8bff7b0139489132a5a8b1b8df96768fbe9dd1e76c9'],
+    ('waldo', '0.6.2', {
+        'checksums': ['b22a746be625eec49736d2a0a18d96c45c14d97e30e42bc81a0740f3194e07fa'],
     }),
-    ('testthat', '3.2.1.1', {
-        'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7'],
+    ('testthat', '3.2.3', {
+        'checksums': ['180b794a5bbc016acec5d882e600e0c5ff4c455513dd451960b217e0e53dc1af'],
     }),
-    ('xml2', '1.3.6', {
-        'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'],
+    ('xml2', '1.4.0', {
+        'checksums': ['0c2e829477f85d36b15f90a2fabb6d286842c6bbb4a5b6ad1ad5ce855a24dc62'],
     }),
-    ('curl', '6.0.1', {
-        'checksums': ['841c90bed7745f972ab524e542b1f5c3632767e3d521c163d483e436f3d42362'],
+    ('curl', '7.0.0', {
+        'checksums': ['5b1633be7bc0ea796e2df5b24b2aec937a17359f2d86207359aa553328824d6b'],
     }),
     ('sys', '3.4.3', {
         'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a'],
@@ -225,8 +225,8 @@ exts_list = [
     ('askpass', '1.2.1', {
         'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd'],
     }),
-    ('openssl', '2.2.2', {
-        'checksums': ['0cb45f413e8ce4664f79a20768fd7853c538ddb87f33819b5e7a6527ae828c96'],
+    ('openssl', '2.3.4', {
+        'checksums': ['a24a02e26abc4055a190e7f14c207cec2853eada77485184835c0b220a71d385'],
     }),
     ('httr', '1.4.7', {
         'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'],
@@ -237,11 +237,11 @@ exts_list = [
     ('rappdirs', '0.3.3', {
         'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'],
     }),
-    ('sass', '0.4.9', {
-        'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2'],
+    ('sass', '0.4.10', {
+        'checksums': ['4adb4c243f74d811276529e346deaa064bce28dbfbb837208fc85f2c47b79b30'],
     }),
-    ('purrr', '1.0.2', {
-        'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'],
+    ('purrr', '1.1.0', {
+        'checksums': ['2ad28bff3b09a67fb3b81fb57d31c9903110e0e9e4fb76871245a35fa39c65b4'],
     }),
     ('cachem', '1.1.0', {
         'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21'],
@@ -249,41 +249,41 @@ exts_list = [
     ('memoise', '2.0.1', {
         'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'],
     }),
-    ('bslib', '0.8.0', {
-        'checksums': ['fd182ddb1b128691d2b0c12882361732a23d451dbf4052ba70b11257e8d44b03'],
+    ('bslib', '0.9.0', {
+        'checksums': ['add7a107ff6a3185f68511cfcc45832f018917870eae06a8044f41de84ff0907'],
     }),
     ('fontawesome', '0.5.3', {
         'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f'],
     }),
-    ('tinytex', '0.54', {
-        'checksums': ['fa5148e2a3813be5e174df3bae0401d282d7f7eb9fd3b173bc196fb9be90fffa'],
+    ('tinytex', '0.57', {
+        'checksums': ['320de051936704a9bbf9a641771e372666f7b6ee228b4d05ffe71d1020add916'],
     }),
-    ('rmarkdown', '2.29', {
-        'checksums': ['6662ac85316c869caad6e3b95468cad97f6eef106d47b066db8d40c05a490928'],
+    ('rmarkdown', '2.30', {
+        'checksums': ['4d2ad3d230c1a9ded394dff76cbaf83a66bb8d96493b8d11cd56be78afa5a338'],
     }),
     ('downlit', '0.4.4', {
         'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828'],
     }),
-    ('cpp11', '0.5.0', {
-        'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3'],
+    ('cpp11', '0.5.2', {
+        'checksums': ['0e8ac07f9d599b82e7a811f9d084e5125ae787b1ba04e5ba57f79e2642af091b'],
     }),
-    ('systemfonts', '1.1.0', {
-        'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644'],
+    ('systemfonts', '1.3.1', {
+        'checksums': ['4392cbf7f97d335b61f7a70257faead2d45a3beeb76249d75a41e9ed82e4456d'],
     }),
-    ('textshaping', '0.4.0', {
-        'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a'],
+    ('textshaping', '1.0.3', {
+        'checksums': ['55153765dc97902902ccf84b072138835cb868fea34503f0fd3888b12ed89447'],
     }),
-    ('ragg', '1.3.3', {
-        'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af'],
+    ('ragg', '1.5.0', {
+        'checksums': ['b8f21c722a05b622a431c53fce748cc8cad52f4791e843e6340dd198477ddabd'],
     }),
     ('whisker', '0.4.1', {
         'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'],
     }),
-    ('httr2', '1.0.6', {
-        'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5'],
+    ('httr2', '1.2.1', {
+        'checksums': ['2728c37f5507740f41bde94703f74f67fc901ad122b1a58e8ad3af4224fd831e'],
     }),
-    ('pkgdown', '2.1.1', {
-        'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde'],
+    ('pkgdown', '2.1.3', {
+        'checksums': ['7aaa4c8aa3ea87cc0a5161834833007d2eb91bda932c297c15d2dda002f1ac8e'],
     }),
     ('htmlwidgets', '1.6.4', {
         'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'],
@@ -294,38 +294,38 @@ exts_list = [
     ('urlchecker', '1.0.1', {
         'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'],
     }),
-    ('later', '1.3.2', {
-        'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'],
+    ('later', '1.4.4', {
+        'checksums': ['18cec083cdbc3e5e9a491fa10af5cfcabb9cd91231e4e8a18e58e8651da7aa80'],
     }),
-    ('promises', '1.3.0', {
-        'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3'],
+    ('promises', '1.3.3', {
+        'checksums': ['46a257688bf0f62b1d06ba81faef6a500185591dd0c24d074a54ce1940c3641e'],
     }),
     ('xtable', '1.8-4', {
         'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'],
     }),
-    ('httpuv', '1.6.15', {
-        'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0'],
+    ('httpuv', '1.6.16', {
+        'checksums': ['51f341aef9499411b4c446205c87d56dcd9e03e5e9ca2a54b33f70a67bed2f64'],
     }),
     ('sourcetools', '0.1.7-1', {
         'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'],
     }),
-    ('shiny', '1.9.1', {
-        'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3'],
+    ('shiny', '1.11.1', {
+        'checksums': ['6f8c0f8618646f6b6d0c2d4ccf8b2430de6b1dc67edec19bb6b88594f4de7129'],
     }),
-    ('miniUI', '0.1.1.1', {
-        'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'],
+    ('miniUI', '0.1.2', {
+        'checksums': ['017a481f7584d385241720f568323b8636ddad385e7098ceff5c12ebf879c22f'],
     }),
     ('brew', '1.0-10', {
         'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'],
     }),
-    ('roxygen2', '7.3.2', {
-        'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c'],
+    ('roxygen2', '7.3.3', {
+        'checksums': ['da416e3ee2abed610da42d42a1a6947c70ef96f74880a35c9dc1e423c359614a'],
     }),
     ('rversions', '2.1.2', {
         'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'],
     }),
-    ('sessioninfo', '1.2.2', {
-        'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'],
+    ('sessioninfo', '1.2.3', {
+        'checksums': ['a02b90a8a6c49a499d972cebc5a15ab44e729b232d00516cb168414701e1c650'],
     }),
     ('xopen', '1.0.1', {
         'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec'],
@@ -345,23 +345,23 @@ exts_list = [
     ('gitcreds', '0.1.2', {
         'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'],
     }),
-    ('gh', '1.4.1', {
-        'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af'],
+    ('gh', '1.5.0', {
+        'checksums': ['295a063084960fc790156d75e1db8b653d6123441079b2c94f1a8937e0329b8e'],
     }),
-    ('credentials', '2.0.2', {
-        'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a'],
+    ('credentials', '2.0.3', {
+        'checksums': ['140043804b4cfcb5e174af3a188ce4cd1e17f7f6aeb777bbd4da21f6c73e013c'],
     }),
-    ('zip', '2.3.1', {
-        'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'],
+    ('zip', '2.3.3', {
+        'checksums': ['d0450b24f8b7b937033ad748b5fad76d23e9464f3e8c0c57a256d64829249a52'],
     }),
-    ('gert', '2.1.4', {
-        'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d'],
+    ('gert', '2.1.5', {
+        'checksums': ['3dc376cb9ccb10cc8cf28581aefe41b91daf9dd71698b014004de1fe592ad918'],
     }),
-    ('usethis', '3.0.0', {
-        'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5'],
+    ('usethis', '3.2.1', {
+        'checksums': ['45bc39d35b0cc2ef7dfe03c488a05c0bac62b498a3d16f745b757e4fba772b77'],
     }),
-    ('devtools', '2.4.5', {
-        'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'],
+    ('devtools', '2.4.6', {
+        'checksums': ['d424a1a0b0110e6a6a2bfcba7958faa7a9cf82fba22f019fc99cc4e10fb80b9a'],
     }),
 ]

Diff against R-4.4.1-gfbf-2023b.eb

easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
index 09a46feeaa..d0473f88b1 100644
--- a/easybuild/easyconfigs/r/R/R-4.4.1-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
@@ -1,43 +1,43 @@
 name = 'R'
-version = '4.4.1'
+version = '4.5.1'
 
 homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['b4cb675deaaeb7299d3b265d218cde43f192951ce5b89b7bb1a5148a36b2d94d']
+checksums = ['b42a7921400386645b10105b91c68728787db5c4c83c9f6c30acdce632e1bb70']
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('Autotools', '20220317'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20231019'),
-    ('Mesa', '23.1.9'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
-    ('ncurses', '6.4'),
+    ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.4'),
-    ('zlib', '1.2.13'),
-    ('SQLite', '3.43.1'),
-    ('PCRE2', '10.42'),
-    ('libpng', '1.6.40'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '11', '', SYSTEM),
-    ('libgit2', '1.7.2'),
-    ('OpenSSL', '1.1', '', SYSTEM),
-    ('cURL', '8.3.0'),
-    ('Tk', '8.6.13'),  # for tcltk
-    ('HarfBuzz', '8.2.2'),  # for textshaping
-    ('FriBidi', '1.0.13'),  # for textshaping
-
+    ('XZ', '5.6.3'),
+    ('zlib', '1.3.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('libwebp', '1.5.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '21', '', SYSTEM),
+    ('libgit2', '1.9.1'),
+    ('OpenSSL', '3', '', SYSTEM),
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
@@ -59,11 +59,8 @@ exts_default_options = {
 }
 
 # !! order of packages is important !!
-# packages updated on 24 June 2024
+# packages updated on 19 September 2025
 exts_list = [
-    # include packages that are part of the base installation of R,
-    # both to make sure they are available (via sanity check),
-    # and to be able to pass the check for required dependencies when installing extensions in parallel
     'base',
     'compiler',
     'datasets',
@@ -78,35 +75,35 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.4', {
-        'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1'],
+    ('rlang', '1.1.6', {
+        'checksums': ['18544c876f4e18ec554edecc308362a52fbc7e0805c4794cf59bcc4d0b57f330'],
     }),
-    ('Rcpp', '1.0.12', {
-        'checksums': ['0c7359cc43beee02761aa3df2baccede1182d29d28c9cd49964b609305062bd0'],
+    ('Rcpp', '1.1.0', {
+        'checksums': ['84211c2520ba68c839b2e75761e97afc90baeebccbaf216ac8534fa2076cfb4d'],
     }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
+    ('R6', '2.6.1', {
+        'checksums': ['59c6eba8b1b912eb7e104f65053235604be853425ee67c152ac4e86a1f2073b4'],
     }),
-    ('cli', '3.6.3', {
-        'checksums': ['4295085f11221c54b1dd2b1d39a675a85dfd9f900294297567e1d36f65ac4841'],
+    ('cli', '3.6.5', {
+        'checksums': ['8ebe3146e66a285d8ad6ddcff87e2a9790ea7c9cdfce7fdd8bf13095fa459679'],
     }),
     ('base64enc', '0.1-3', {
         'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
     }),
-    ('rprojroot', '2.0.4', {
-        'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'],
+    ('rprojroot', '2.1.1', {
+        'checksums': ['473989bbef45fd9cd68f68dc317b14c9f42de5cea4b55fd6ba9011f25e0517e9'],
     }),
-    ('xfun', '0.45', {
-        'checksums': ['3816f05c2fd297b40750be1a2f386f0aa4637136421f504d14b6ad9ea0993611'],
+    ('xfun', '0.53', {
+        'checksums': ['9e5936d3a2ba027c1c3dc5b609cf94f982d6e3d785ced70fed9f76ed7ac3fba6'],
     }),
-    ('commonmark', '1.9.1', {
-        'checksums': ['9517a13f4ce4a99bb157493453b04419b222cb65a9471cd3b11e5045ac0db53b'],
+    ('commonmark', '2.0.0', {
+        'checksums': ['7f47d7f9f4ff5d1e2a73a69f6e233d2ddbafae97944ddf664a6000aa94936904'],
     }),
     ('highr', '0.11', {
         'checksums': ['e90d14284001963325a84a9dbeef029609d52515da8d65c87ae61be21b7fe0a7'],
     }),
-    ('digest', '0.6.36', {
-        'checksums': ['d1777364b2358b3ff9d79428fa7c1b280042f88896302765b0d0e2d4dc7ae637'],
+    ('digest', '0.6.37', {
+        'checksums': ['82c4d149994b8a4a9af930f5a8e47420829935abed41f3f9030e94b6a48f0321'],
     }),
     ('desc', '1.4.3', {
         'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26'],
@@ -120,32 +117,32 @@ exts_list = [
     ('crayon', '1.5.3', {
         'checksums': ['3e74a0685541efb5ea763b92cfd5c859df71c46b0605967a0b5dbb7326e9da69'],
     }),
-    ('stringi', '1.8.4', {
-        'checksums': ['c219f8f64d1a2bfd4ca9528452d44d30db1899af14f4b9ef248412443bc669f3'],
+    ('stringi', '1.8.7', {
+        'checksums': ['0526decdcd41b7c42278aca96945394c2cb66ba6fdd47fd917b5d3d38ed5c8c6'],
     }),
-    ('magrittr', '2.0.3', {
-        'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'],
+    ('magrittr', '2.0.4', {
+        'checksums': ['6aba790c40de70d8fb4d2db4bebb377418971761b0da7df2141b5d4ad95981f3'],
     }),
-    ('evaluate', '0.24.0', {
-        'checksums': ['e23d764a58e7525257d57da4ccfee9d6f63b5b3c18bf01c76818ec8c9c587fd6'],
+    ('evaluate', '1.0.5', {
+        'checksums': ['47aac79f889a828a5f8b4756cb972d7c2966bb984cbae17a4bd2389a73270794'],
     }),
-    ('ps', '1.7.6', {
-        'checksums': ['52c35ffc3d1e1d984a94c7bbd671ef4ad70946990cbcd80e814e17937b056dd2'],
+    ('ps', '1.9.1', {
+        'checksums': ['6f093c0beb87684afe098b71e16593366210d5d38992a7c3740ca1075da4df7d'],
     }),
-    ('processx', '3.8.4', {
-        'checksums': ['6627672d7fb109f37dc1d0eaef913f4cfc7ad8ac807abf0397e6d37753b1e70b'],
+    ('processx', '3.8.6', {
+        'checksums': ['c5f1cafd0e4351caf512298888574a6b3bdd1b4d0fb42ef2834c7bf955734221'],
     }),
     ('callr', '3.7.6', {
         'checksums': ['e4bce367e869e42eaeea05566d2033d8cee2103179b11cd9a401440b58a351f8'],
     }),
-    ('pkgbuild', '1.4.4', {
-        'checksums': ['5972843cd43654715cdbdd28f50af013fa3d1c213146654992b2b5f39ed0e2a8'],
+    ('pkgbuild', '1.4.8', {
+        'checksums': ['2e4259202ce90fc452f31ff36cfe14ff21a38e9fd71c3015e25018b9079924cb'],
     }),
-    ('fs', '1.6.4', {
-        'checksums': ['7e06290f2dbe36f54fdf51b748a4b00b8b0f68967b5754e37e0c83df7fea5ac8'],
+    ('fs', '1.6.6', {
+        'checksums': ['57d3a0844e2fec28e6fe9901d18e07d32a437dfe43c4b547757eb07360f5850a'],
     }),
-    ('utf8', '1.2.4', {
-        'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'],
+    ('utf8', '1.2.6', {
+        'checksums': ['4589f8b72291329e70b7f3a8c20f2feb4e7764eebad2e6976bc9a3eee7686ce9'],
     }),
     ('fansi', '1.0.6', {
         'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'],
@@ -153,17 +150,20 @@ exts_list = [
     ('pkgconfig', '2.0.3', {
         'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850'],
     }),
-    ('withr', '3.0.0', {
-        'checksums': ['8c78eede6d0e648c23d38a6695f642aed2819ef708239d00b36cbc15eabbe0e7'],
+    ('withr', '3.0.2', {
+        'checksums': ['0a3a05f493d275cca4bf13c8c1b95a1a4eed7f83b2493f41fde02ce3fc92c1a3'],
     }),
-    ('glue', '1.7.0', {
-        'checksums': ['1af51b51f52c1aeb3bfe9349f55896dd78b5542ffdd5654e432e4d646e4a86dc'],
+    ('glue', '1.8.0', {
+        'checksums': ['c86f364ba899b8662f5da3e1a75f43ae081ab04e0d51171d052356e7ee4b72a0'],
     }),
-    ('rstudioapi', '0.16.0', {
-        'checksums': ['74ffa867199e87a54386fbd26919233371f314f73d7338dd4e4695708fed4fe6'],
+    ('rstudioapi', '0.17.1', {
+        'checksums': ['617ef983c8960673131fb92203fc3c64a7d3787e7479d42daba7acc49b5b3909'],
     }),
-    ('pkgload', '1.3.4', {
-        'checksums': ['60b04b948cda4dc56257b1e89f9b0a4b1273cacecdb2bd995d66dd76e89926ce'],
+    ('lifecycle', '1.0.4', {
+        'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
+    }),
+    ('pkgload', '1.4.1', {
+        'checksums': ['51f370165c124904b907e78f6f0192b88ce2df5a93835cddd11565a328709976'],
     }),
     ('fastmap', '1.2.0', {
         'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246'],
@@ -171,14 +171,14 @@ exts_list = [
     ('htmltools', '0.5.8.1', {
         'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176'],
     }),
-    ('yaml', '2.3.8', {
-        'checksums': ['9ed079e2159cae214f3fefcbc4c8eb3b888ceabe902350adbdb1d181eda23fd8'],
+    ('yaml', '2.3.10', {
+        'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d'],
     }),
-    ('knitr', '1.47', {
-        'checksums': ['fadd849bf94a4e02520088a6626577c3c636227fe11c5cd7e8fcc5d51a7aa6cf'],
+    ('knitr', '1.50', {
+        'checksums': ['105f5e8420ad766c94b96a787cb3ce368d12ef8702f867d0515c4fce728e2f41'],
     }),
-    ('mime', '0.12', {
-        'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'],
+    ('mime', '0.13', {
+        'checksums': ['7132834cf3c3388eff12bad376d69fbcf8275acc37d36c290e59174fe3c7f3eb'],
     }),
     ('praise', '1.0.0', {
         'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'],
@@ -186,50 +186,47 @@ exts_list = [
     ('brio', '1.1.5', {
         'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8'],
     }),
-    ('jsonlite', '1.8.8', {
-        'checksums': ['7de21316984c3ba3d7423d12f43d1c30c716007c5e39bf07e11885e0ceb0caa4'],
-    }),
-    ('lifecycle', '1.0.4', {
-        'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
+    ('jsonlite', '2.0.0', {
+        'checksums': ['75eb910c82b350ec33f094779da0f87bff154c232e4ae39c9896a9b89f3ac82d'],
     }),
     ('vctrs', '0.6.5', {
         'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402'],
     }),
-    ('stringr', '1.5.1', {
-        'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de'],
+    ('stringr', '1.5.2', {
+        'checksums': ['d410ecb4f19c3fd07bb32142d5d0286e2f19f1533ba86243776326a4e73837a3'],
     }),
-    ('pillar', '1.9.0', {
-        'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc'],
+    ('pillar', '1.11.1', {
+        'checksums': ['056ce154238c9b5b8d5dcbcb52e1bc51d33870ce08c8a9ca9496478bd59f4653'],
     }),
-    ('tibble', '3.2.1', {
-        'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131'],
+    ('tibble', '3.3.0', {
+        'checksums': ['7f4c439f11b1aca4a45923d8d76f90fbab4e01acf0ba7ad0c38c3a7f22fee192'],
     }),
-    ('diffobj', '0.3.5', {
-        'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60'],
+    ('diffobj', '0.3.6', {
+        'checksums': ['b316d9c37177b19ce7f39ba32872d09ab600909709fd313c1e39398a4ae51287'],
     }),
     ('rematch2', '2.1.2', {
         'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb'],
     }),
-    ('waldo', '0.5.2', {
-        'checksums': ['82cdae1ab2c5e7e5dbf5c6bdf832020b46e152732053fb45de7c9a81afdf2e05'],
+    ('waldo', '0.6.2', {
+        'checksums': ['b22a746be625eec49736d2a0a18d96c45c14d97e30e42bc81a0740f3194e07fa'],
     }),
-    ('testthat', '3.2.1.1', {
-        'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7'],
+    ('testthat', '3.2.3', {
+        'checksums': ['180b794a5bbc016acec5d882e600e0c5ff4c455513dd451960b217e0e53dc1af'],
     }),
-    ('xml2', '1.3.6', {
-        'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'],
+    ('xml2', '1.4.0', {
+        'checksums': ['0c2e829477f85d36b15f90a2fabb6d286842c6bbb4a5b6ad1ad5ce855a24dc62'],
     }),
-    ('curl', '5.2.1', {
-        'checksums': ['4a7a4d8c08aa1bca2fcd9c58ade7b4b0ea2ed9076d0521071be29baac8adfa90'],
+    ('curl', '7.0.0', {
+        'checksums': ['5b1633be7bc0ea796e2df5b24b2aec937a17359f2d86207359aa553328824d6b'],
     }),
-    ('sys', '3.4.2', {
-        'checksums': ['b7bdce66f0fb681830ea6fb77b5a2c6babb43920abb1eddc733f95c0a63ce5b3'],
+    ('sys', '3.4.3', {
+        'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a'],
     }),
-    ('askpass', '1.2.0', {
-        'checksums': ['b922369781934d0ffc8d0c0177e8ace56796c2e6a726f65e460c16f792592cef'],
+    ('askpass', '1.2.1', {
+        'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd'],
     }),
-    ('openssl', '2.2.0', {
-        'checksums': ['18b8b46ae8db4bd57c7bcc8e10d0bb549ae63e383502051cef86102ab617ddb3'],
+    ('openssl', '2.3.4', {
+        'checksums': ['a24a02e26abc4055a190e7f14c207cec2853eada77485184835c0b220a71d385'],
     }),
     ('httr', '1.4.7', {
         'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'],
@@ -240,11 +237,11 @@ exts_list = [
     ('rappdirs', '0.3.3', {
         'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'],
     }),
-    ('sass', '0.4.9', {
-        'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2'],
+    ('sass', '0.4.10', {
+        'checksums': ['4adb4c243f74d811276529e346deaa064bce28dbfbb837208fc85f2c47b79b30'],
     }),
-    ('purrr', '1.0.2', {
-        'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'],
+    ('purrr', '1.1.0', {
+        'checksums': ['2ad28bff3b09a67fb3b81fb57d31c9903110e0e9e4fb76871245a35fa39c65b4'],
     }),
     ('cachem', '1.1.0', {
         'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21'],
@@ -252,80 +249,83 @@ exts_list = [
     ('memoise', '2.0.1', {
         'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'],
     }),
-    ('bslib', '0.7.0', {
-        'checksums': ['2135d9841af382673b815a14454abff2f2ce0f5dc97484d1499298b85b752ca0'],
+    ('bslib', '0.9.0', {
+        'checksums': ['add7a107ff6a3185f68511cfcc45832f018917870eae06a8044f41de84ff0907'],
     }),
-    ('fontawesome', '0.5.2', {
-        'checksums': ['da3de2a9717084d1400d48edd783f06c66b8c910ce9c8d753d1b7d99be1c5cc9'],
+    ('fontawesome', '0.5.3', {
+        'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f'],
     }),
-    ('tinytex', '0.51', {
-        'checksums': ['bb113b51b4b58e78902a0220d709650c1458a8c6d3fa03f58ba007f0eb74c8ea'],
+    ('tinytex', '0.57', {
+        'checksums': ['320de051936704a9bbf9a641771e372666f7b6ee228b4d05ffe71d1020add916'],
     }),
-    ('rmarkdown', '2.27', {
-        'checksums': ['61e9cb3eab4f8587fea98d3358652695b7e77eda858caa4c8985241ba6502b9f'],
+    ('rmarkdown', '2.30', {
+        'checksums': ['4d2ad3d230c1a9ded394dff76cbaf83a66bb8d96493b8d11cd56be78afa5a338'],
     }),
     ('downlit', '0.4.4', {
         'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828'],
     }),
-    ('cpp11', '0.4.7', {
-        'checksums': ['801d1266824c3972642bce2db2a5fd0528a65ec845c58eb5a886edf082264344'],
+    ('cpp11', '0.5.2', {
+        'checksums': ['0e8ac07f9d599b82e7a811f9d084e5125ae787b1ba04e5ba57f79e2642af091b'],
     }),
-    ('systemfonts', '1.1.0', {
-        'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644'],
+    ('systemfonts', '1.3.1', {
+        'checksums': ['4392cbf7f97d335b61f7a70257faead2d45a3beeb76249d75a41e9ed82e4456d'],
     }),
-    ('textshaping', '0.4.0', {
-        'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a'],
+    ('textshaping', '1.0.3', {
+        'checksums': ['55153765dc97902902ccf84b072138835cb868fea34503f0fd3888b12ed89447'],
     }),
-    ('ragg', '1.3.2', {
-        'checksums': ['8037a45209fdd50acf101208af8e832b840a11ad4201cf7fb480de432e6b6931'],
+    ('ragg', '1.5.0', {
+        'checksums': ['b8f21c722a05b622a431c53fce748cc8cad52f4791e843e6340dd198477ddabd'],
     }),
     ('whisker', '0.4.1', {
         'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'],
     }),
-    ('pkgdown', '2.0.9', {
-        'checksums': ['6e542216c03b5286cb9901175d1a7937a664db2572bc28bb51e9000269fcdda0'],
+    ('httr2', '1.2.1', {
+        'checksums': ['2728c37f5507740f41bde94703f74f67fc901ad122b1a58e8ad3af4224fd831e'],
+    }),
+    ('pkgdown', '2.1.3', {
+        'checksums': ['7aaa4c8aa3ea87cc0a5161834833007d2eb91bda932c297c15d2dda002f1ac8e'],
     }),
     ('htmlwidgets', '1.6.4', {
         'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'],
     }),
-    ('profvis', '0.3.8', {
-        'checksums': ['ec02c75bc9907a73564e691adfa8e06651ca0bd73b7915412960231cd265b4b2'],
+    ('profvis', '0.4.0', {
+        'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4'],
     }),
     ('urlchecker', '1.0.1', {
         'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'],
     }),
-    ('later', '1.3.2', {
-        'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'],
+    ('later', '1.4.4', {
+        'checksums': ['18cec083cdbc3e5e9a491fa10af5cfcabb9cd91231e4e8a18e58e8651da7aa80'],
     }),
-    ('promises', '1.3.0', {
-        'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3'],
+    ('promises', '1.3.3', {
+        'checksums': ['46a257688bf0f62b1d06ba81faef6a500185591dd0c24d074a54ce1940c3641e'],
     }),
     ('xtable', '1.8-4', {
         'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'],
     }),
-    ('httpuv', '1.6.15', {
-        'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0'],
+    ('httpuv', '1.6.16', {
+        'checksums': ['51f341aef9499411b4c446205c87d56dcd9e03e5e9ca2a54b33f70a67bed2f64'],
     }),
     ('sourcetools', '0.1.7-1', {
         'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'],
     }),
-    ('shiny', '1.8.1.1', {
-        'checksums': ['a38d5fb5d750e2c2091ce9101f138c1f9bc7009bbb195227a3519c5d97e36753'],
+    ('shiny', '1.11.1', {
+        'checksums': ['6f8c0f8618646f6b6d0c2d4ccf8b2430de6b1dc67edec19bb6b88594f4de7129'],
     }),
-    ('miniUI', '0.1.1.1', {
-        'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'],
+    ('miniUI', '0.1.2', {
+        'checksums': ['017a481f7584d385241720f568323b8636ddad385e7098ceff5c12ebf879c22f'],
     }),
     ('brew', '1.0-10', {
         'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'],
     }),
-    ('roxygen2', '7.3.1', {
-        'checksums': ['215e9fa9c0e73cb33f9870854c97b25c1a6386f519f69f397123f1a66656e2c8'],
+    ('roxygen2', '7.3.3', {
+        'checksums': ['da416e3ee2abed610da42d42a1a6947c70ef96f74880a35c9dc1e423c359614a'],
     }),
     ('rversions', '2.1.2', {
         'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'],
     }),
-    ('sessioninfo', '1.2.2', {
-        'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'],
+    ('sessioninfo', '1.2.3', {
+        'checksums': ['a02b90a8a6c49a499d972cebc5a15ab44e729b232d00516cb168414701e1c650'],
     }),
     ('xopen', '1.0.1', {
         'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec'],
@@ -345,26 +345,23 @@ exts_list = [
     ('gitcreds', '0.1.2', {
         'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'],
     }),
-    ('httr2', '1.0.1', {
-        'checksums': ['33e92d830981b33cd5e55068b500c57dbfb72329c2fce54be3163c63b217f1b2'],
-    }),
-    ('gh', '1.4.1', {
-        'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af'],
+    ('gh', '1.5.0', {
+        'checksums': ['295a063084960fc790156d75e1db8b653d6123441079b2c94f1a8937e0329b8e'],
     }),
-    ('credentials', '2.0.1', {
-        'checksums': ['2c7cfc45bd4afa9a2c2b85d43e907b212da3468781e1b617737bd095253c358b'],
+    ('credentials', '2.0.3', {
+        'checksums': ['140043804b4cfcb5e174af3a188ce4cd1e17f7f6aeb777bbd4da21f6c73e013c'],
     }),
-    ('zip', '2.3.1', {
-        'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'],
+    ('zip', '2.3.3', {
+        'checksums': ['d0450b24f8b7b937033ad748b5fad76d23e9464f3e8c0c57a256d64829249a52'],
     }),
-    ('gert', '2.0.1', {
-        'checksums': ['0ed784837809ce89797ea77834d420e89351728f70d8d2f4b34487df813cd092'],
+    ('gert', '2.1.5', {
+        'checksums': ['3dc376cb9ccb10cc8cf28581aefe41b91daf9dd71698b014004de1fe592ad918'],
     }),
-    ('usethis', '2.2.3', {
-        'checksums': ['8d0c98995c23b5f4b5b95cd453557d2d15faa7399cc01bff304f5b15cb0cdeb3'],
+    ('usethis', '3.2.1', {
+        'checksums': ['45bc39d35b0cc2ef7dfe03c488a05c0bac62b498a3d16f745b757e4fba772b77'],
     }),
-    ('devtools', '2.4.5', {
-        'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'],
+    ('devtools', '2.4.6', {
+        'checksums': ['d424a1a0b0110e6a6a2bfcba7958faa7a9cf82fba22f019fc99cc4e10fb80b9a'],
     }),
 ]

Diff against R-4.3.3-gfbf-2023b.eb

easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
index de0461be65..d0473f88b1 100644
--- a/easybuild/easyconfigs/r/R/R-4.3.3-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb
@@ -1,46 +1,43 @@
 name = 'R'
-version = '4.3.3'
+version = '4.5.1'
 
 homepage = 'https://www.r-project.org/'
 description = """R is a free software environment for statistical computing
  and graphics."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'gfbf', 'version': '2025a'}
 
 source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
 sources = [SOURCE_TAR_GZ]
-patches = ['R-4.x_fix-CVE-2024-27322.patch']
-checksums = [
-    {'R-4.3.3.tar.gz': '80851231393b85bf3877ee9e39b282e750ed864c5ec60cbd68e6e139f0520330'},
-    {'R-4.x_fix-CVE-2024-27322.patch': 'd8560e15c3c5716f99e852541901014d406f2a73136b0b74f11ba529f7a7b00d'},
-]
+checksums = ['b42a7921400386645b10105b91c68728787db5c4c83c9f6c30acdce632e1bb70']
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('Autotools', '20220317'),
+    ('pkgconf', '2.3.0'),
+    ('Autotools', '20240712'),
 ]
 dependencies = [
-    ('X11', '20231019'),
-    ('Mesa', '23.1.9'),
+    ('X11', '20250521'),
+    ('Mesa', '25.1.3'),
     ('libGLU', '9.0.3'),
-    ('cairo', '1.18.0'),
+    ('cairo', '1.18.4'),
     ('libreadline', '8.2'),
-    ('ncurses', '6.4'),
+    ('ncurses', '6.5'),
     ('bzip2', '1.0.8'),
-    ('XZ', '5.4.4'),
-    ('zlib', '1.2.13'),
-    ('SQLite', '3.43.1'),
-    ('PCRE2', '10.42'),
-    ('libpng', '1.6.40'),  # for plotting in R
-    ('libjpeg-turbo', '3.0.1'),  # for plottting in R
-    ('LibTIFF', '4.6.0'),
-    ('Java', '11', '', SYSTEM),
-    ('libgit2', '1.7.2'),
-    ('OpenSSL', '1.1', '', SYSTEM),
-    ('cURL', '8.3.0'),
-    ('Tk', '8.6.13'),  # for tcltk
-    ('HarfBuzz', '8.2.2'),  # for textshaping
-    ('FriBidi', '1.0.13'),  # for textshaping
+    ('XZ', '5.6.3'),
+    ('zlib', '1.3.1'),
+    ('SQLite', '3.47.2'),
+    ('PCRE2', '10.45'),
+    ('libpng', '1.6.48'),
+    ('libjpeg-turbo', '3.1.0'),
+    ('libwebp', '1.5.0'),
+    ('LibTIFF', '4.7.0'),
+    ('Java', '21', '', SYSTEM),
+    ('libgit2', '1.9.1'),
+    ('OpenSSL', '3', '', SYSTEM),
+    ('cURL', '8.11.1'),
+    ('Tk', '8.6.16'),
+    ('HarfBuzz', '11.2.1'),
+    ('FriBidi', '1.0.16'),
 ]
 
 # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols.
@@ -62,11 +59,8 @@ exts_default_options = {
 }
 
 # !! order of packages is important !!
-# packages updated on 4th March 2024
+# packages updated on 19 September 2025
 exts_list = [
-    # include packages that are part of the base installation of R,
-    # both to make sure they are available (via sanity check),
-    # and to be able to pass the check for required dependencies when installing extensions in parallel
     'base',
     'compiler',
     'datasets',
@@ -81,35 +75,35 @@ exts_list = [
     'tcltk',
     'tools',
     'utils',
-    ('rlang', '1.1.3', {
-        'checksums': ['24a3424b5dc2c4bd3e5f7c0b54fbe1355028e329181b2d41f4464c8ade28bf0a'],
+    ('rlang', '1.1.6', {
+        'checksums': ['18544c876f4e18ec554edecc308362a52fbc7e0805c4794cf59bcc4d0b57f330'],
     }),
-    ('Rcpp', '1.0.12', {
-        'checksums': ['0c7359cc43beee02761aa3df2baccede1182d29d28c9cd49964b609305062bd0'],
+    ('Rcpp', '1.1.0', {
+        'checksums': ['84211c2520ba68c839b2e75761e97afc90baeebccbaf216ac8534fa2076cfb4d'],
     }),
-    ('R6', '2.5.1', {
-        'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'],
+    ('R6', '2.6.1', {
+        'checksums': ['59c6eba8b1b912eb7e104f65053235604be853425ee67c152ac4e86a1f2073b4'],
     }),
-    ('cli', '3.6.2', {
-        'checksums': ['4c0749e3711b2b6ae90fd992784303bc8d98039599cac1deb397239a7018e151'],
+    ('cli', '3.6.5', {
+        'checksums': ['8ebe3146e66a285d8ad6ddcff87e2a9790ea7c9cdfce7fdd8bf13095fa459679'],
     }),
     ('base64enc', '0.1-3', {
         'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'],
     }),
-    ('rprojroot', '2.0.4', {
-        'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'],
+    ('rprojroot', '2.1.1', {
+        'checksums': ['473989bbef45fd9cd68f68dc317b14c9f42de5cea4b55fd6ba9011f25e0517e9'],
     }),
-    ('xfun', '0.42', {
-        'checksums': ['07bbfaed212ba1fcb9367624e8bc4936a7884e30e0efc561199acd0fcba5750a'],
+    ('xfun', '0.53', {
+        'checksums': ['9e5936d3a2ba027c1c3dc5b609cf94f982d6e3d785ced70fed9f76ed7ac3fba6'],
     }),
-    ('commonmark', '1.9.1', {
-        'checksums': ['9517a13f4ce4a99bb157493453b04419b222cb65a9471cd3b11e5045ac0db53b'],
+    ('commonmark', '2.0.0', {
+        'checksums': ['7f47d7f9f4ff5d1e2a73a69f6e233d2ddbafae97944ddf664a6000aa94936904'],
     }),
-    ('highr', '0.10', {
-        'checksums': ['ec55bc1ff66390ed66806dc2a7b6c17dbfd089b3d73fe2e369017f8cb4bc347b'],
+    ('highr', '0.11', {
+        'checksums': ['e90d14284001963325a84a9dbeef029609d52515da8d65c87ae61be21b7fe0a7'],
     }),
-    ('digest', '0.6.34', {
-        'checksums': ['0b737552932f165d4158ac94631f90abfb02c510df14577d7aa900c8fd3d44d9'],
+    ('digest', '0.6.37', {
+        'checksums': ['82c4d149994b8a4a9af930f5a8e47420829935abed41f3f9030e94b6a48f0321'],
     }),
     ('desc', '1.4.3', {
         'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26'],
@@ -120,35 +114,35 @@ exts_list = [
     ('prettyunits', '1.2.0', {
         'checksums': ['f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea'],
     }),
-    ('crayon', '1.5.2', {
-        'checksums': ['70a9a505b5b3c0ee6682ad8b965e28b7e24d9f942160d0a2bad18eec22b45a7a'],
+    ('crayon', '1.5.3', {
+        'checksums': ['3e74a0685541efb5ea763b92cfd5c859df71c46b0605967a0b5dbb7326e9da69'],
     }),
-    ('stringi', '1.8.3', {
-        'checksums': ['1602be8edd1dd8ac5a836f4077cbc9d6a312ca4b2c594a0486370e8c1e314925'],
+    ('stringi', '1.8.7', {
+        'checksums': ['0526decdcd41b7c42278aca96945394c2cb66ba6fdd47fd917b5d3d38ed5c8c6'],
     }),
-    ('magrittr', '2.0.3', {
-        'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'],
+    ('magrittr', '2.0.4', {
+        'checksums': ['6aba790c40de70d8fb4d2db4bebb377418971761b0da7df2141b5d4ad95981f3'],
     }),
-    ('evaluate', '0.23', {
-        'checksums': ['c9cf9c37502b8fbfa78e4eb96b8c3d1789060e49505c86c07cb7476da804a45c'],
+    ('evaluate', '1.0.5', {
+        'checksums': ['47aac79f889a828a5f8b4756cb972d7c2966bb984cbae17a4bd2389a73270794'],
     }),
-    ('ps', '1.7.6', {
-        'checksums': ['52c35ffc3d1e1d984a94c7bbd671ef4ad70946990cbcd80e814e17937b056dd2'],
+    ('ps', '1.9.1', {
+        'checksums': ['6f093c0beb87684afe098b71e16593366210d5d38992a7c3740ca1075da4df7d'],
     }),
-    ('processx', '3.8.3', {
-        'checksums': ['1ad8c51482b89702fbbb6621b1a179c1ae67b78388b8fd9c841bbc8cf035d831'],
+    ('processx', '3.8.6', {
+        'checksums': ['c5f1cafd0e4351caf512298888574a6b3bdd1b4d0fb42ef2834c7bf955734221'],
     }),
-    ('callr', '3.7.5', {
-        'checksums': ['18a11e8f7324d5b013149af69a32784aea7433863492aaabccd8d227b73b472c'],
+    ('callr', '3.7.6', {
+        'checksums': ['e4bce367e869e42eaeea05566d2033d8cee2103179b11cd9a401440b58a351f8'],
     }),
-    ('pkgbuild', '1.4.3', {
-        'checksums': ['1583edb56c0afab6f99d0dd2235fd45999461f89e8ca50bc7c0b74211f109165'],
+    ('pkgbuild', '1.4.8', {
+        'checksums': ['2e4259202ce90fc452f31ff36cfe14ff21a38e9fd71c3015e25018b9079924cb'],
     }),
-    ('fs', '1.6.3', {
-        'checksums': ['fa82061e50d7a4d94b7e404f9f2b699e75ae8fbfb575fabdfc2c39f536c0f971'],
+    ('fs', '1.6.6', {
+        'checksums': ['57d3a0844e2fec28e6fe9901d18e07d32a437dfe43c4b547757eb07360f5850a'],
     }),
-    ('utf8', '1.2.4', {
-        'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'],
+    ('utf8', '1.2.6', {
+        'checksums': ['4589f8b72291329e70b7f3a8c20f2feb4e7764eebad2e6976bc9a3eee7686ce9'],
     }),
     ('fansi', '1.0.6', {
         'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'],
@@ -156,83 +150,83 @@ exts_list = [
     ('pkgconfig', '2.0.3', {
         'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850'],
     }),
-    ('withr', '3.0.0', {
-        'checksums': ['8c78eede6d0e648c23d38a6695f642aed2819ef708239d00b36cbc15eabbe0e7'],
+    ('withr', '3.0.2', {
+        'checksums': ['0a3a05f493d275cca4bf13c8c1b95a1a4eed7f83b2493f41fde02ce3fc92c1a3'],
     }),
-    ('glue', '1.7.0', {
-        'checksums': ['1af51b51f52c1aeb3bfe9349f55896dd78b5542ffdd5654e432e4d646e4a86dc'],
+    ('glue', '1.8.0', {
+        'checksums': ['c86f364ba899b8662f5da3e1a75f43ae081ab04e0d51171d052356e7ee4b72a0'],
     }),
-    ('rstudioapi', '0.15.0', {
-        'checksums': ['935bc81dca37d3d6e77982bfe6e7fbd779e8606e5b7e00d0ba4c80fec0416ccf'],
+    ('rstudioapi', '0.17.1', {
+        'checksums': ['617ef983c8960673131fb92203fc3c64a7d3787e7479d42daba7acc49b5b3909'],
     }),
-    ('brio', '1.1.4', {
-        'checksums': ['0cbbf38948682b2435eea69b04be59187b149183dc7562df71dc0d3e260e18e8'],
+    ('lifecycle', '1.0.4', {
+        'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
     }),
-    ('pkgload', '1.3.4', {
-        'checksums': ['60b04b948cda4dc56257b1e89f9b0a4b1273cacecdb2bd995d66dd76e89926ce'],
+    ('pkgload', '1.4.1', {
+        'checksums': ['51f370165c124904b907e78f6f0192b88ce2df5a93835cddd11565a328709976'],
     }),
-    ('fastmap', '1.1.1', {
-        'checksums': ['3623809dd016ae8abd235200ba7834effc4b916915a059deb76044137c5c7173'],
+    ('fastmap', '1.2.0', {
+        'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246'],
     }),
-    ('htmltools', '0.5.7', {
-        'checksums': ['ecb0d82619063f49e4d001c44fcc1b811a06928fd66c2bb8c86632798d98b386'],
+    ('htmltools', '0.5.8.1', {
+        'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176'],
     }),
-    ('yaml', '2.3.8', {
-        'checksums': ['9ed079e2159cae214f3fefcbc4c8eb3b888ceabe902350adbdb1d181eda23fd8'],
+    ('yaml', '2.3.10', {
+        'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d'],
     }),
-    ('knitr', '1.45', {
-        'checksums': ['ee2edea53bc53efa51d131ab5a0b0c829c0f950b79d3c6ee34705354bf7584fb'],
+    ('knitr', '1.50', {
+        'checksums': ['105f5e8420ad766c94b96a787cb3ce368d12ef8702f867d0515c4fce728e2f41'],
     }),
-    ('mime', '0.12', {
-        'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'],
+    ('mime', '0.13', {
+        'checksums': ['7132834cf3c3388eff12bad376d69fbcf8275acc37d36c290e59174fe3c7f3eb'],
     }),
     ('praise', '1.0.0', {
         'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'],
     }),
-    ('jsonlite', '1.8.8', {
-        'checksums': ['7de21316984c3ba3d7423d12f43d1c30c716007c5e39bf07e11885e0ceb0caa4'],
+    ('brio', '1.1.5', {
+        'checksums': ['a9f22335ea39039de25bb27bccd5ff1ffb2b743579b31d150b6b91c9ea81d0b8'],
     }),
-    ('lifecycle', '1.0.4', {
-        'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'],
+    ('jsonlite', '2.0.0', {
+        'checksums': ['75eb910c82b350ec33f094779da0f87bff154c232e4ae39c9896a9b89f3ac82d'],
     }),
     ('vctrs', '0.6.5', {
         'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402'],
     }),
-    ('stringr', '1.5.1', {
-        'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de'],
+    ('stringr', '1.5.2', {
+        'checksums': ['d410ecb4f19c3fd07bb32142d5d0286e2f19f1533ba86243776326a4e73837a3'],
     }),
-    ('pillar', '1.9.0', {
-        'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc'],
+    ('pillar', '1.11.1', {
+        'checksums': ['056ce154238c9b5b8d5dcbcb52e1bc51d33870ce08c8a9ca9496478bd59f4653'],
     }),
-    ('tibble', '3.2.1', {
-        'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131'],
+    ('tibble', '3.3.0', {
+        'checksums': ['7f4c439f11b1aca4a45923d8d76f90fbab4e01acf0ba7ad0c38c3a7f22fee192'],
     }),
-    ('diffobj', '0.3.5', {
-        'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60'],
+    ('diffobj', '0.3.6', {
+        'checksums': ['b316d9c37177b19ce7f39ba32872d09ab600909709fd313c1e39398a4ae51287'],
     }),
     ('rematch2', '2.1.2', {
         'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb'],
     }),
-    ('waldo', '0.5.2', {
-        'checksums': ['82cdae1ab2c5e7e5dbf5c6bdf832020b46e152732053fb45de7c9a81afdf2e05'],
+    ('waldo', '0.6.2', {
+        'checksums': ['b22a746be625eec49736d2a0a18d96c45c14d97e30e42bc81a0740f3194e07fa'],
     }),
-    ('testthat', '3.2.1', {
-        'checksums': ['1d980e611b01c194007639a100c3ddaeaab77786d32f81680f497f99e60748ad'],
+    ('testthat', '3.2.3', {
+        'checksums': ['180b794a5bbc016acec5d882e600e0c5ff4c455513dd451960b217e0e53dc1af'],
     }),
-    ('xml2', '1.3.6', {
-        'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'],
+    ('xml2', '1.4.0', {
+        'checksums': ['0c2e829477f85d36b15f90a2fabb6d286842c6bbb4a5b6ad1ad5ce855a24dc62'],
     }),
-    ('curl', '5.2.1', {
-        'checksums': ['4a7a4d8c08aa1bca2fcd9c58ade7b4b0ea2ed9076d0521071be29baac8adfa90'],
+    ('curl', '7.0.0', {
+        'checksums': ['5b1633be7bc0ea796e2df5b24b2aec937a17359f2d86207359aa553328824d6b'],
     }),
-    ('sys', '3.4.2', {
-        'checksums': ['b7bdce66f0fb681830ea6fb77b5a2c6babb43920abb1eddc733f95c0a63ce5b3'],
+    ('sys', '3.4.3', {
+        'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a'],
     }),
-    ('askpass', '1.2.0', {
-        'checksums': ['b922369781934d0ffc8d0c0177e8ace56796c2e6a726f65e460c16f792592cef'],
+    ('askpass', '1.2.1', {
+        'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd'],
     }),
-    ('openssl', '2.1.1', {
-        'checksums': ['faa726f9af2a97d5fa1e1044f4a38ee2edd4c81f0beb5830f6a36ff249b64bdc'],
+    ('openssl', '2.3.4', {
+        'checksums': ['a24a02e26abc4055a190e7f14c207cec2853eada77485184835c0b220a71d385'],
     }),
     ('httr', '1.4.7', {
         'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'],
@@ -243,101 +237,104 @@ exts_list = [
     ('rappdirs', '0.3.3', {
         'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'],
     }),
-    ('sass', '0.4.8', {
-        'checksums': ['42ba2930cd22ad9f5e0022b9ac53bdbc4c9250f00e0646e6502f635a6db3c40c'],
+    ('sass', '0.4.10', {
+        'checksums': ['4adb4c243f74d811276529e346deaa064bce28dbfbb837208fc85f2c47b79b30'],
     }),
-    ('purrr', '1.0.2', {
-        'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'],
+    ('purrr', '1.1.0', {
+        'checksums': ['2ad28bff3b09a67fb3b81fb57d31c9903110e0e9e4fb76871245a35fa39c65b4'],
     }),
-    ('cachem', '1.0.8', {
-        'checksums': ['ea9ca919fe615dce8770758ecc2fc88ac99074f66ff1cde3a0b95d40007f45c2'],
+    ('cachem', '1.1.0', {
+        'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21'],
     }),
     ('memoise', '2.0.1', {
         'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'],
     }),
-    ('bslib', '0.6.1', {
-        'checksums': ['642735afd7d3895f1ac8c5a5f7f5e08001bfabcf62a56d2d85904655a2e931db'],
+    ('bslib', '0.9.0', {
+        'checksums': ['add7a107ff6a3185f68511cfcc45832f018917870eae06a8044f41de84ff0907'],
     }),
-    ('fontawesome', '0.5.2', {
-        'checksums': ['da3de2a9717084d1400d48edd783f06c66b8c910ce9c8d753d1b7d99be1c5cc9'],
+    ('fontawesome', '0.5.3', {
+        'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f'],
     }),
-    ('tinytex', '0.49', {
-        'checksums': ['941169ec65445d172658d0fb6ea8d839736f3f1b5f6ce20637d7d8e299663145'],
+    ('tinytex', '0.57', {
+        'checksums': ['320de051936704a9bbf9a641771e372666f7b6ee228b4d05ffe71d1020add916'],
     }),
-    ('rmarkdown', '2.25', {
-        'checksums': ['06e4662666fe018fbe3bef3531280a461c7bc24bb00f34b9d4c7b08d52210155'],
+    ('rmarkdown', '2.30', {
+        'checksums': ['4d2ad3d230c1a9ded394dff76cbaf83a66bb8d96493b8d11cd56be78afa5a338'],
     }),
-    ('downlit', '0.4.3', {
-        'checksums': ['6c0fbe98ece8a511973263f8e8a35574df0cfc45edea7452b53b8d326436b3bd'],
+    ('downlit', '0.4.4', {
+        'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828'],
     }),
-    ('cpp11', '0.4.7', {
-        'checksums': ['801d1266824c3972642bce2db2a5fd0528a65ec845c58eb5a886edf082264344'],
+    ('cpp11', '0.5.2', {
+        'checksums': ['0e8ac07f9d599b82e7a811f9d084e5125ae787b1ba04e5ba57f79e2642af091b'],
     }),
-    ('systemfonts', '1.0.5', {
-        'checksums': ['840ffb1d8293739c79cbc868101d9f9a84f4a9de4c7b3625e30af2fb63e15823'],
+    ('systemfonts', '1.3.1', {
+        'checksums': ['4392cbf7f97d335b61f7a70257faead2d45a3beeb76249d75a41e9ed82e4456d'],
     }),
-    ('textshaping', '0.3.7', {
-        'checksums': ['fa924dbe1fb4138b80d6c26ee42f4203843f1d34f77e2a5e42514e6fcc97ec42'],
+    ('textshaping', '1.0.3', {
+        'checksums': ['55153765dc97902902ccf84b072138835cb868fea34503f0fd3888b12ed89447'],
     }),
-    ('ragg', '1.2.7', {
-        'checksums': ['d77a18662d127881dcb5046033eb809293ad9ad439fa4b217202b8cef4280c9f'],
+    ('ragg', '1.5.0', {
+        'checksums': ['b8f21c722a05b622a431c53fce748cc8cad52f4791e843e6340dd198477ddabd'],
     }),
     ('whisker', '0.4.1', {
         'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'],
     }),
-    ('pkgdown', '2.0.7', {
-        'checksums': ['f33872869dfa8319182d87e90eab3245ff69293b3b791471bf9538afb81b356a'],
+    ('httr2', '1.2.1', {
+        'checksums': ['2728c37f5507740f41bde94703f74f67fc901ad122b1a58e8ad3af4224fd831e'],
+    }),
+    ('pkgdown', '2.1.3', {
+        'checksums': ['7aaa4c8aa3ea87cc0a5161834833007d2eb91bda932c297c15d2dda002f1ac8e'],
     }),
     ('htmlwidgets', '1.6.4', {
         'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'],
     }),
-    ('profvis', '0.3.8', {
-        'checksums': ['ec02c75bc9907a73564e691adfa8e06651ca0bd73b7915412960231cd265b4b2'],
+    ('profvis', '0.4.0', {
+        'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4'],
     }),
     ('urlchecker', '1.0.1', {
         'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'],
     }),
-    ('later', '1.3.2', {
-        'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'],
+    ('later', '1.4.4', {
+        'checksums': ['18cec083cdbc3e5e9a491fa10af5cfcabb9cd91231e4e8a18e58e8651da7aa80'],
     }),
-    ('promises', '1.2.1', {
-        'checksums': ['3ce0a26df39ea27536877ec6db13083b2952108245024baa8b40ae856d2ce5be'],
+    ('promises', '1.3.3', {
+        'checksums': ['46a257688bf0f62b1d06ba81faef6a500185591dd0c24d074a54ce1940c3641e'],
     }),
     ('xtable', '1.8-4', {
         'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'],
     }),
-    ('httpuv', '1.6.14', {
-        'checksums': ['4026acae26bd99873e269b062f343f2239131130b43fdfd6a1a5a89b913cd181'],
+    ('httpuv', '1.6.16', {
+        'checksums': ['51f341aef9499411b4c446205c87d56dcd9e03e5e9ca2a54b33f70a67bed2f64'],
     }),
     ('sourcetools', '0.1.7-1', {
         'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'],
     }),
-    ('shiny', '1.8.0', {
-        'checksums': ['f28740ba28707e8b3dabb2ad27b002dae555317010660702163bb0daefe04641'],
+    ('shiny', '1.11.1', {
+        'checksums': ['6f8c0f8618646f6b6d0c2d4ccf8b2430de6b1dc67edec19bb6b88594f4de7129'],
     }),
-    ('miniUI', '0.1.1.1', {
-        'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'],
+    ('miniUI', '0.1.2', {
+        'checksums': ['017a481f7584d385241720f568323b8636ddad385e7098ceff5c12ebf879c22f'],
     }),
     ('brew', '1.0-10', {
         'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'],
     }),
-    ('roxygen2', '7.3.1', {
-        'checksums': ['215e9fa9c0e73cb33f9870854c97b25c1a6386f519f69f397123f1a66656e2c8'],
+    ('roxygen2', '7.3.3', {
+        'checksums': ['da416e3ee2abed610da42d42a1a6947c70ef96f74880a35c9dc1e423c359614a'],
     }),
     ('rversions', '2.1.2', {
         'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'],
     }),
-    ('sessioninfo', '1.2.2', {
-        'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'],
+    ('sessioninfo', '1.2.3', {
+        'checksums': ['a02b90a8a6c49a499d972cebc5a15ab44e729b232d00516cb168414701e1c650'],
     }),
-    ('xopen', '1.0.0', {
-        'checksums': ['e207603844d69c226142be95281ba2f4a056b9d8cbfae7791ba60535637b3bef'],
+    ('xopen', '1.0.1', {
+        'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec'],
     }),
     ('rcmdcheck', '1.4.0', {
         'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0'],
     }),
-    ('remotes', '2.4.2.1', {
-        'checksums': ['7ba8ca9a652d60bcdea25dbd43bd1e055e97b031c05e0bc3fac43bf245c1209d'],
+    ('remotes', '2.5.0', {
+        'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c'],
     }),
     ('clipr', '0.8.0', {
         'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9'],
@@ -348,26 +345,23 @@ exts_list = [
     ('gitcreds', '0.1.2', {
         'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'],
     }),
-    ('httr2', '1.0.0', {
-        'checksums': ['cb852d6f560c329a7dc17aa760f09a0950413513dc8abfc3facb6418b2934a49'],
-    }),
-    ('gh', '1.4.0', {
-        'checksums': ['68c69fcd18429b378e639a09652465a4e92b7b5b5704804d0c5b1ca2b9b58b71'],
+    ('gh', '1.5.0', {
+        'checksums': ['295a063084960fc790156d75e1db8b653d6123441079b2c94f1a8937e0329b8e'],
     }),
-    ('credentials', '2.0.1', {
-        'checksums': ['2c7cfc45bd4afa9a2c2b85d43e907b212da3468781e1b617737bd095253c358b'],
+    ('credentials', '2.0.3', {
+        'checksums': ['140043804b4cfcb5e174af3a188ce4cd1e17f7f6aeb777bbd4da21f6c73e013c'],
     }),
-    ('zip', '2.3.1', {
-        'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'],
+    ('zip', '2.3.3', {
+        'checksums': ['d0450b24f8b7b937033ad748b5fad76d23e9464f3e8c0c57a256d64829249a52'],
     }),
-    ('gert', '2.0.1', {
-        'checksums': ['0ed784837809ce89797ea77834d420e89351728f70d8d2f4b34487df813cd092'],
+    ('gert', '2.1.5', {
+        'checksums': ['3dc376cb9ccb10cc8cf28581aefe41b91daf9dd71698b014004de1fe592ad918'],
     }),
-    ('usethis', '2.2.3', {
-        'checksums': ['8d0c98995c23b5f4b5b95cd453557d2d15faa7399cc01bff304f5b15cb0cdeb3'],
+    ('usethis', '3.2.1', {
+        'checksums': ['45bc39d35b0cc2ef7dfe03c488a05c0bac62b498a3d16f745b757e4fba772b77'],
     }),
-    ('devtools', '2.4.5', {
-        'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'],
+    ('devtools', '2.4.6', {
+        'checksums': ['d424a1a0b0110e6a6a2bfcba7958faa7a9cf82fba22f019fc99cc4e10fb80b9a'],
     }),
 ]

smoretti · 2025-10-03T13:55:05Z

Requires:

{vis}[GCCcore/14.2.0] libGLU v9.0.3 #23756

Maybe contains #24056
Update based on #23545

Micket · 2025-10-03T21:46:38Z

You don't permit PR's to be updated by upstream maintainers, so you must sync this PR with develop yourself

smoretti · 2025-10-10T13:25:29Z

According to https://developer.r-project.org/, R v4.5.2 is scheduled for Friday 2025-10-31.

I can update the PR to R v4.5.2 at that time, if you want

boegel · 2025-10-14T11:09:48Z

@smoretti Is there a good reason to wait for R v4.5.2?

Did you also look into the update of R-bundle-CRAN on top of this?

smoretti · 2025-10-15T07:29:48Z

No particular reason, just the release is soon, with internal R library updates.

I have not yet looked into R-bundle-CRAN. Next step with R-bundle-Bioconductor

boegel · 2025-10-17T09:30:44Z

We have a specific user request for R v4.5 (and R-INLA on top), so I would like to get this merged ASAP so we can look into R-bundle-CRAN on top...

smoretti · 2025-10-17T11:43:35Z

So I guess you can do the merge for R 4.5.1

After that, for R-bundle-Bioconductor, I think we should wait for the upcoming Bioconductor release Oct 29th (https://www.bioconductor.org/developers/release-schedule/)

boegel

see sib-swiss#3

easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb

minor style fixes in R 4.5.1 easyconfig

boegel · 2025-10-18T15:51:08Z

@boegelbot please test @ jsc-zen3
CORE_CNT=16

boegelbot · 2025-10-18T16:00:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24107 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24107 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 8468

Test results coming soon (I hope)...

Details

- notification for comment with ID 3418604258 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-10-18T17:21:38Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/92ae3e0a069a108f0a407261bfd3d5a3 for a full test report.

boegel · 2025-10-18T17:53:20Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4206.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/boegel/e218a77b6a5742f2bfcbef43d8bfe344 for a full test report.

easybuild/easyconfigs/r/R/R-4.5.1-gfbf-2025a.eb

…or R 4.5.1

boegel · 2025-10-19T10:23:50Z

Going in, thanks @SIB-software!

adding easyconfigs: R-4.5.1-gfbf-2025a.eb

96bcc53

github-actions bot added the update label Oct 3, 2025

Thyre added the 2025a issues & PRs related to 2025a common toolchains label Oct 3, 2025

Use only develop as upstream

2bf5c69

minor style fixes in R 4.5.1 easyconfig

5fd32d4

boegel added this to the next release (5.2.0?) milestone Oct 17, 2025

boegel mentioned this pull request Oct 17, 2025

minor style fixes in R 4.5.1 easyconfig sib-swiss/easybuild-easyconfigs#3

Merged

boegel requested changes Oct 17, 2025

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Merge pull request #3 from boegel/20251003152815_new_pr_R451

23fcc1a

minor style fixes in R 4.5.1 easyconfig

boegel requested changes Oct 18, 2025

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restore comments for source URLs used for R libraries in easyconfig f…

a381921

…or R 4.5.1

boegel approved these changes Oct 19, 2025

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boegel merged commit 9b18c6f into easybuilders:develop Oct 19, 2025
8 checks passed

smoretti deleted the 20251003152815_new_pr_R451 branch October 20, 2025 09:10

Thyre mentioned this pull request Dec 15, 2025

{vis}[GCCcore/14.2.0] R v4.4.2 #23545

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Updated software `R-4.5.1-gfbf-2025a.eb`

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