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Update from upstream repo nixOS/nixpkgs@master#16

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eadwu merged 49 commits intoeadwu:masterfrom
NixOS:master
Jun 24, 2018
Merged

Update from upstream repo nixOS/nixpkgs@master#16
eadwu merged 49 commits intoeadwu:masterfrom
NixOS:master

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The upstream repository nixOS/nixpkgs@master has some new changes that aren't in this fork. So, here they are, ready to be merged! 🎉

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alexvorobiev and others added 30 commits June 18, 2018 23:10
The exception message is broken becuase of some uppercase vs. lowercase
issues that have been patched accordingly.

Additionally use `fetchpatch` rather than `fetchurl` to apply patches
into the build.
Revert "python: jupyterlab_launcher: 0.10.5 -> 0.11.0"
python3Packages.git-annex-adapter: fix build
pythonPackages.monty: init at 1.0.2
pythonPackages.seekpath: init at 1.8.1
nixos/screen: add `pkgs.screen` to the system closure
pythonPackages.clustershell: init at 1.8
for 1.66 & 1.67 we were overriding the default toolset option. This
meant that gcc-cross was not being selected properly, breaking the
cross toolchain.

/cc @dtzWill
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/tbb/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 2018_U5 with grep in /nix/store/xhqkrh6rrs3ji21v1rdicm3f50j1ildx-tbb-2018_U5
- directory tree listing: https://gist.github.com/cfe37285702751a390a4ccdcf83b000e
- du listing: https://gist.github.com/ef220dc185b398311333a7d43930787a
Mostly same as used with LLVM 4.0
(as we do on other LLVM builds)
Don't have a fix for this handy and don't need it yet
so for now just disable.
Same as those added to llvm_39 a few commits ago.
dtzWill and others added 19 commits June 23, 2018 15:53
llvmPackages_{38,39}: musl compat, minor cleanup
darwin build times out on sdl-config
sdl-config has an issue on hydra where it will hang when run on
Darwin. This is probably related to the headless mode that is set up &
the sdl-config program waiting for a graphical to finish.
ghc-{8.2.2,8.4.3}: "useLLVM" when target is musl as well
Hasn’t been building or upgraded since 2015:
#9781
I hoped that setting -D_GNU_SOURCE in the build would avoid
the need for this patch -- but that only fixes the build itself,
this patch adds the define so headers work elsewhere.

Particularly, this fixes libblockdev w/musl -- before this change
it fails to "detect" headers for dmraid.h since it doesn't compile.
dmraid: patch to fix users of dmraid when using musl
@eadwu eadwu merged commit 99e12fc into eadwu:master Jun 24, 2018
eadwu pushed a commit that referenced this pull request Jun 20, 2020
Hardware notes are seemingly less useful than a README, and
kernelAtLeast option, while potentially useful:

a) is not used anywhere in the tree at the moment,
b) doesn't properly work when there are multiple elements in the list,
c) assumes that there are no degradations ever.
eadwu pushed a commit that referenced this pull request Apr 3, 2025
fluent-bit 3.2.7, 3.2.8 and 3.2.9 are segfaulting when
used in combination with the systemd input. Lets
revert to 3.2.6 for now.

Upstream bug: fluent/fluent-bit#10139

Note that fluent-bit-3.2.7 fixes two high CVEs which we are now
reintroducing. However they are only exploitable if you are
using the OpenTelemetry input or the Prometheus Remote Write input.

OpenTelemetry input: [CVE-2024-50609](https://nvd.nist.gov/vuln/detail/CVE-2024-50609)
Prometheus Remote Write input: [CVE-2024-50608](https://nvd.nist.gov/vuln/detail/CVE-2024-50608)

The problem is as follows:

3.2.7 started vendoring a copy of `libzstd` in tree and statically
linking against it. Also, the fluent-bit binary exports the symbols
of static libraries it links against.

This is a problem because `libzstd` gets `dlopen()`ed by `libsystemd`
when enumerating the journal (as journal logs are zstd compressed). and `libzstd` in Nixpkgs is built
with `-DZSTD_LEGACY_SUPPORT=0` which causes `struct ZSTD_DCtx` to be 16
bytes smaller than without this flag https://github.com/facebook/zstd/blob/dev/lib/decompress/zstd_decompress_internal.h#L183-L187

`libsystemd` calls [`sym_ZSTD_createDCtx()`](https://github.com/systemd/systemd/blob/1e79a2923364b65fc9f347884dd5b9b2087f6e32/src/basic/compress.c#L480)
which calls the function pointer returned by `dlsym()` which is calling into
the `libzstd` that comes with `nixpkgs` and thus allocates a struct that is 16 bytes smaller.

Later then `sym_ZSTD_freeDCtx()` is called. However because fluent-bit
has `zstd` in its global symbol table, any functions that `sym_ZSTD_freeDCtx()`
calls will be calls to the functions in the vendored fluent-bit version of the library
which expects the larger struct. This then causes enough heap corruption to cause
a segfault.

E.g. the subsequent calls to `ZSTD_clearDict(dctx)` and `ZSTD_customFree(dctx->inBuff)`
in https://github.com/facebook/zstd/blob/dev/lib/decompress/zstd_decompress.c#L324
will be working on a struct that is 16 bytes smaller than the one that was allocated
by `libsystemd` and will cause a segfault at some point and thus are probably modifying
pieces of memory that they shouldn't

	(gdb) bt
	#0  0x00007f10e7e9916c in __pthread_kill_implementation () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#1  0x00007f10e7e40e86 in raise () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#2  0x00007f10e7e2893a in abort () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#3  0x000000000046a938 in flb_signal_handler ()
	#4  <signal handler called>
	#5  0x00007f10e7ea42b7 in unlink_chunk.isra () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#6  0x00007f10e7ea45cd in _int_free_create_chunk () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#7  0x00007f10e7ea5a1c in _int_free_merge_chunk () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#8  0x00007f10e7ea5dc9 in _int_free () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#9  0x00007f10e7ea8613 in free () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	#10 0x00007f10e80ad3b5 in ZSTD_freeDCtx () from /nix/store/wy0slah6yvchgra8nhp6vgrqa6ay72cq-zstd-1.5.6/lib/libzstd.so.1
	#11 0x00007f10e8c90f6b in decompress_blob_zstd () from /nix/store/b2cfj7yk3wfg1jdwjzim7306hvsc5gnl-systemd-257.3/lib/libsystemd.so.0
	#12 0x00007f10e8bf0efe in journal_file_data_payload () from /nix/store/b2cfj7yk3wfg1jdwjzim7306hvsc5gnl-systemd-257.3/lib/libsystemd.so.0
	#13 0x00007f10e8c00f74 in sd_journal_enumerate_data () from /nix/store/b2cfj7yk3wfg1jdwjzim7306hvsc5gnl-systemd-257.3/lib/libsystemd.so.0
	#14 0x00000000004eae2f in in_systemd_collect ()
	#15 0x00000000004eb5a0 in in_systemd_collect_archive ()
	#16 0x000000000047aa18 in flb_input_collector_fd ()
	#17 0x0000000000495223 in flb_engine_start ()
	NixOS#18 0x000000000046f304 in flb_lib_worker ()
	NixOS#19 0x00007f10e7e972e3 in start_thread () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6
	NixOS#20 0x00007f10e7f1b2fc in __clone3 () from /nix/store/rmy663w9p7xb202rcln4jjzmvivznmz8-glibc-2.40-66/lib/libc.so.6

Reverts 7310ab3
Reverts 4fbc6cf
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