Skip to content

Issues: czbiohub-sf/iohub

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

30 Open 93 Closed
30 Open 93 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Implement OME-NGFF v0.5 (Zarr v3) enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#257 opened Oct 16, 2024 by ziw-liu
test_combine_fovs_to_hcs fails bug Something isn't working NGFF OME-NGFF (OME-Zarr format)
#255 opened Oct 1, 2024 by ieivanov
create_position fails when inconsistent row/column capitalization is used NGFF OME-NGFF (OME-Zarr format)
#253 opened Sep 30, 2024 by ieivanov
1
2
Position should be a subclass of BaseFOV
#249 opened Sep 26, 2024 by talonchandler
get the zarr dataset size with iohub info verbose enhancement New feature or request good first issue Good for newcomers
#247 opened Sep 26, 2024 by edyoshikun
Multi-version gallery build fails bug Something isn't working CI Continuous integration documentation Improvements or additions to documentation
#239 opened Aug 8, 2024 by ziw-liu
CLI or similar to change the channel names. enhancement New feature or request
#236 opened Aug 5, 2024 by edyoshikun
1
TypeError: ImageArray.__init__() got an unexpected keyword argument 'store' question Further information is requested
#226 opened Jun 29, 2024 by ieivanov
2
TIFF UAPI TODOs documentation Improvements or additions to documentation μManager Micro-Manager files and metadata
#213 opened Mar 4, 2024 by ziw-liu
1 of 2 tasks
0.2.0
Add TIFF examples documentation Improvements or additions to documentation
#212 opened Feb 22, 2024 by ziw-liu 0.2.0
1
CLI to update metadata of zarr stores enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#210 opened Feb 16, 2024 by ieivanov 0.2.0
4
support ome-ngff on s3 enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#209 opened Feb 13, 2024 by d-v-b 0.2.0
5
Add tests for converting OpenCell datasets CI Continuous integration
#199 opened Oct 25, 2023 by ieivanov
better logging enhancement New feature or request
#188 opened Sep 25, 2023 by ieivanov 0.2.0
iohub appending does not change or raise warning regarding datatype NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#187 opened Sep 11, 2023 by edyoshikun
1
iohub rechunk CLI enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#184 opened Sep 1, 2023 by mattersoflight
@ziw-liu
2
Test with a real HCS OME-TIFF dataset CI Continuous integration μManager Micro-Manager files and metadata
#163 opened Jul 24, 2023 by ziw-liu
5
Root path of BaseFOV μManager Micro-Manager files and metadata question Further information is requested
#157 opened Jun 29, 2023 by ziw-liu 0.2.0
1
Save grayscale data and binary masks in the OME-zarr store enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#156 opened Jun 28, 2023 by nbathreya
@ziw-liu
2
Per-frame metadata in UAPI help wanted Extra attention is needed
#155 opened Jun 22, 2023 by ziw-liu 0.2.0
5
Test on NDTIFFv3 datasets CI Continuous integration μManager Micro-Manager files and metadata
#149 opened Jun 20, 2023 by ziw-liu
1
Contrast limit should follow the datatype of the dataset bug Something isn't working good first issue Good for newcomers NGFF OME-NGFF (OME-Zarr format)
#117 opened Apr 19, 2023 by edyoshikun
@edyoshikun
1
Add code coverage check on PRs CI Continuous integration good first issue Good for newcomers meta About how we organize the project
#115 opened Apr 17, 2023 by ziw-liu
Can convert pass the most important information from micromanager image plane metadata? enhancement New feature or request μManager Micro-Manager files and metadata
#103 opened Apr 5, 2023 by talonchandler
8
add TIFF writer enhancement New feature or request
#99 opened Mar 27, 2023 by rachel-banks
8
ProTip! What’s not been updated in a month: updated:<2024-10-04.