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get the zarr dataset size with iohub info verbose #247

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edyoshikun opened this issue Sep 26, 2024 · 0 comments
Open

get the zarr dataset size with iohub info verbose #247

edyoshikun opened this issue Sep 26, 2024 · 0 comments
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enhancement New feature or request good first issue Good for newcomers

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@edyoshikun
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edyoshikun commented Sep 26, 2024

Request:
iohub info -v /test.zarr

should output in the summary the size of the dataset in GB.
output:

Reading file:    test.zarr
Zarr hierarchy:
/
 └── plate
     └── 0
         ├── 0
            └── 0 (1, 6, 97, 2048, 2048) float32
=== Summary ===
Format:                  omezarr v0.4
Axes:                    T (time); C (channel); Z (space); Y (space); X (space); 
Channel names:           ['Phase3D', 'Deconvolved-Mem', 'Deconvolved-Nuc', 'BF', 'TRITC - 554~595', 'Cy5 - 635~730']
Row names:               ['plate']
Column names:            ['0']
Wells:                   1
Positions:               12
Total Size[GB]:  ((position_shape)*num_positions*dtype_bytes)/1e-9
@edyoshikun edyoshikun added enhancement New feature or request good first issue Good for newcomers labels Sep 26, 2024
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enhancement New feature or request good first issue Good for newcomers
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