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Releases: chienchi/amplicon_coverage_plot

0.3.4

05 Dec 20:45
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Add grep -w for specific REF_ID

What's Changed

New Contributors

Full Changelog: 0.3.3...0.3.4

0.3.3

12 Jan 23:20
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Add amplicon range hover information

0.3.2

10 Dec 04:27
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  • Add --count_primer option to count overlapped primer region to unique coverage

0.3.1

14 Aug 04:42
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  • apply RefID on gff file parsing.
  • fix off by one coverage calculation
  • fix bug on gff parsing

0.3.0

02 Aug 20:40
7e922c1
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  • add --gff option for providing annotation hover info
  • add bed6/bedpe format link and simple format check
  • adjust hover text information

0.2.1

14 Jun 16:42
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  • Make depth lines configurable on the command line by @pvanheus (pull request #2)
  • Update test case result

0.2.0

26 Jan 16:52
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  • merge feature addition to add number of ambiguous calculation and additional trace line on final plot by @lskatz. (pull request #1 )
  • fix bug: unique region parsing from bed/bedpe file. It was missing the first and last region and error when there is fully covered amplicon by another amplicon.
  • expose the min coverage as parameter to let user define the ambigous N and default to 10
  • fix bug: the interatcive plot with new added trace to show number of ambiguous.

0.1.3

29 Jun 22:14
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  • color black for < 5x and blue for <20x
  • add bam input required sort by coordinate

0.1.2

17 Jun 20:57
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  1. Add counting of reads, proper paired reads. until_eof=True for not index bam file
  2. Fix bug on input bam file.
  3. Add --pp for process proper-pair only bam file
  4. Add test bam and bedpe file
  5. Add tick mark

0.1.1

11 Jun 22:33
677271d
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Update README.md