updated grep bug #9
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If one reference name is a substring of another, e.g. RSV_A and RSV_AD, then amplicov will pull the RSV_AD primer locations along with RSV_A primer locations. The reason is that
Line 124 in Amplidov: cmd = 'grep %s %s | cut -f 2,3,5,6,7 ' % (RefID, input_bedpe)
used a default grep, which does not do exact matching.