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πŸ’­
coding, coding, coding
πŸ’­
coding, coding, coding

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@ncezid-biome

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lskatz/README.md

Hi there πŸ‘‹

I am a bioinformatician in the Enteric Diseases Laboratory Branch at CDC. My repos include those for work and those for outside of work.

  • I speak 🐫 perl, βš™οΈ rust, and 🐬 SQL
  • I pretend to speak πŸ™„ R and 🐍 Python.
  • 😡 In my past lives, I used to code PHP, HTML, CSS, JavaScript, and even some C.

I have worked on some perl modules including Bio::Kmer but also more complete packages such as Mashtree and Lyve-SET. I have more in my repos and would be glad to collaborate with you!

For more information

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  1. mashtree mashtree Public

    🌳 Create a tree using Mash distances

    Perl 156 25

  2. lyve-SET lyve-SET Public

    πŸ’ƒ 🌴 LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

    Perl 25 18

  3. SneakerNet SneakerNet Public

    🐾 QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run

    Perl 11 4

  4. fasten fasten Public

    πŸ‘· Fasten toolkit, for streaming operations on fastq files

    Rust 77 6

  5. Kalamari Kalamari Public

    πŸ™ A curated database of completed assemblies with taxonomy IDs

    Perl 39 3

  6. tongzhouxu/mashpit tongzhouxu/mashpit Public

    πŸ“ Sketch-based surveillance platform

    Python 9 3