fix: Enable agent to see instruction to use final output tool when it wasn't called #3253
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There was a bug that the final tool continuation message was not being added to the internal 'messages' variable so the llm never saw the message telling it to use the final tool (creating an infinite loop). This PR fixes that by adding the message to the 'messages' variable. As this is all internal to the reply loop I can't easily write a test for it but I have tested it locally.