Refactor marine ensemble recentering script and move to GW from GDASApp

[DavidNew-NOAA]

Description

This PR does a couple things:

1. It moves the marine ensemble recentering script into the Global Workflow from GDASApp and refactors it to fully use the Jedi class, JCB, and wxflow FileHandler.
2. The ocnanalecen and marineanlletkf will now be enkfgdas rather than gdas jobs.
3. The ocnanalecen job is renamed marineanlecen
4. The marineanlfinal will now save yaml files to COMOUT_CONF, like all other jobs do.

Resolves #3801
Resolves #3767

Type of change

• Bug fix (fixes something broken)
• [] New feature (adds functionality)
• Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

• Is this a breaking change (a change in existing functionality)? YES
• Does this change require a documentation update? NO
• Does this change require an update to any of the following submodules? YES (If YES, please add a link to any PRs that are pending.)
  • EMC verif-global
  • GDAS Companion for GW refactoring of marine ensemble recentering GDASApp#1803
  • GFS-utils
  • GSI
  • GSI-monitor
  • GSI-utils
  • UFS-utils
  • UFS-weather-model
  • wxflow

How has this been tested?

• Clone and build on Hera
• Run C96C48_ufs_hybatmDA, C96C48_hybatmDA, C48mx500_3DVarAOWCDA, C48mx500_hybAOWCDA, and C96C48_hybatmsnowDA

Checklist

• Any dependent changes have been merged and published
• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have documented my code, including function, input, and output descriptions
• My changes generate no new warnings
• New and existing tests pass with my changes
• This change is covered by an existing CI test or a new one has been added
• Any new scripts have been added to the .github/CODEOWNERS file with owners
• I have made corresponding changes to the system documentation if necessary

[TerrenceMcGuinness-NOAA]

The build for gfs_model on Hercules timed out (the uploaded gist of log file got truncated):

/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/CI/3882/global-workflow/sorc/ufs_model.fd/WW3/model/src/w3wavemd.F90(458): remark #6536: All symbols from this module are already visible due to another USE; the ONLY clause will have no effect. Rename clauses, if any, will be honored.   [W3TIMEMD]
    USE W3TIMEMD
--------^
/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/cmake-3.23.1-uqaeynr/bin/cmake -E cmake_copy_f90_mod WW3/model/src/mod/wminitmd.mod WW3/model/src/CMakeFiles/ww3_lib.dir/wminitmd.mod.stamp Intel
/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/cmake-3.23.1-uqaeynr/bin/cmake -E touch WW3/model/src/CMakeFiles/ww3_lib.dir/wminitmd.F90.o.provides.build
slurmstepd: error: *** JOB 5955406 ON hercules-01-20 CANCELLED AT 2025-07-29T10:25:27 DUE TO TIME LIMIT ***

https://jenkins.epic.oarcloud.noaa.gov/job/global-workflow/job/EMC-Global-Pipeline/view/change-requests/job/PR-3882/4/artifact/logs/gfs_model.log

[DavidNew-NOAA]

Thanks @TerrenceMcGuinness-NOAA for letting us know

[DavidHuber-NOAA]

@DavidNew-NOAA Could you add the following patch to dev/workflow/build_opts.yaml?

diff --git a/dev/workflow/build_opts.yaml b/dev/workflow/build_opts.yaml
index 5f1e88f85..8a4e21953 100644
--- a/dev/workflow/build_opts.yaml
+++ b/dev/workflow/build_opts.yaml
@@ -36,7 +36,7 @@ build:
   gfs_model:
     command: "./build_ufs.sh -e gfs_model.x"
     cores: 12
-    walltime: "00:30:00"
+    walltime: "00:40:00"

   gfs_ww3prepost:
     command: "./build_ww3prepost.sh"
@@ -46,7 +46,7 @@ build:
   gefs_model:
     command: "./build_ufs.sh -w -e gefs_model.x"
     cores: 12
-    walltime: "00:30:00"
+    walltime: "00:40:00"

   gefs_ww3_prepost:
     command: "./build_ww3prepost.sh -w"
@@ -56,12 +56,12 @@ build:
   sfs_model:
     command: "./build_ufs.sh -y -e sfs_model.x"
     cores: 12
-    walltime: "00:30:00"
+    walltime: "00:40:00"

   gcafs_model:
     command: "./build_ufs.sh -a ATMAERO -e gcafs_model.x"
     cores: 12
-    walltime: "00:30:00"
+    walltime: "00:40:00"

   upp:
     command: "./build_upp.sh"

[DavidNew-NOAA]

@DavidHuber-NOAA patch applied

[RussTreadon-NOAA]

See that Gaea C6 and Hercules CI passed. Do you want me to set up and run WCOSS2 (Cactus) CI?

I ask because GDASApp develop contains change which require DavidNew-NOAA:feature/marine-refactor to run g-w. Developers don't know this and encounter problems running GDASApp develop with g-w develop. This inconsistency goes away (at least for now) once this PR is merged into g-w develop

[DavidNew-NOAA]

@RussTreadon-NOAA I don't how much CI is sufficient. If this passes on Gaea and Hercules and manually on Hera, I don't see a reason not to merge. @aerorahul and @DavidHuber-NOAA ?

[DavidHuber-NOAA]

Looks good to me.

[DavidHuber-NOAA]

@DavidNew-NOAA agreed. Merging now.

[DavidNew-NOAA]

Thanks @DavidHuber-NOAA !