Get SOCA vrfy job working on Hera again by CoryMartin-NOAA · Pull Request #1045 · NOAA-EMC/GDASApp

CoryMartin-NOAA · 2024-04-16T14:28:31Z

What the title says. Fixes #994

…velop

CoryMartin-NOAA · 2024-04-16T14:32:25Z

unit tests fail because EMC RZDM is down...

guillaumevernieres

Thanks @CoryMartin-NOAA

RussTreadon-NOAA · 2024-04-16T14:50:01Z

unit tests fail because EMC RZDM is down...

I am unable to build GDASApp from PR #1033. I no longer think PR #1033 is the issue. I'm beginning to suspect the failure is related to EMC RZDM being offline. Attempts to build GDASApp develop at several hashes fail as documented in PR #1033.

CoryMartin-NOAA · 2024-04-16T14:56:38Z

I'm not sure what to do to fix this logjam. We have no idea when RZDM will be back. Do we disable all unit tests in the interim? Find an alternate place to store the files? Other options?

emcbot · 2024-04-16T14:57:12Z

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Tue Apr 16 09:37:02 CDT 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Tue Apr 16 09:57:11 CDT 2024
Build: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/log.build

emcbot · 2024-04-16T15:02:41Z

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Tue Apr 16 14:44:36 UTC 2024 on hfe11
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Tue Apr 16 15:02:40 UTC 2024
Build: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/log.build

guillaumevernieres · 2024-04-16T15:03:23Z

I'm not sure what to do to fix this logjam. We have no idea when RZDM will be back. Do we disable all unit tests in the interim? Find an alternate place to store the files? Other options?

should we put the tarball on hpc instead?

RussTreadon-NOAA · 2024-04-16T15:04:15Z

Why does our not being able to download test files from EMC RZDM break the GDASApp build? It should only break testing, not the build, right? Does cmake intertwine application testing with the application build in such a way that if we can't build the tests, we can't build GDASApp?

RussTreadon-NOAA · 2024-04-16T15:06:41Z

Do we have tarball gdasapp-fix-${SHORTSHA}.tgz available from somewhere besides https://ftp.emc.ncep.noaa.gov/static_files/public/GDASApp?

CoryMartin-NOAA · 2024-04-16T15:11:31Z

Why does our not being able to download test files from EMC RZDM break the GDASApp build? It should only break testing, not the build, right? Does cmake intertwine application testing with the application build in such a way that if we can't build the tests, we can't build GDASApp?

It's because CMake is doing the downloading. It fails, so CMake can't finish. Perhaps we should instead have a test that runs that downloads/links the files. This is how JCSDA does it for JEDI.

RussTreadon-NOAA · 2024-04-16T15:13:29Z

Placing the tarball on HPC is an option but when the given machine is offline, we're stuck. We could place the tarball on multiple HPC platforms. Even this approach has potential pitfalls. For example, we place the tarball in /work2 but when we want to build on Orion or Hercules /work2 is offline for some reason and only /work is available.

RussTreadon-NOAA · 2024-04-16T15:16:21Z

Why does our not being able to download test files from EMC RZDM break the GDASApp build? It should only break testing, not the build, right? Does cmake intertwine application testing with the application build in such a way that if we can't build the tests, we can't build GDASApp?

It's because CMake is doing the downloading. It fails, so CMake can't finish. Perhaps we should instead have a test that runs that downloads/links the files. This is how JCSDA does it for JEDI.

This is a good option. It separates the application build from the application tests. We should be able to compile GDASApp whether or not data for ctests is available.

emcbot · 2024-04-17T00:37:30Z

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Wed Apr 17 00:36:44 UTC 2024 on hfe11
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Wed Apr 17 00:37:30 UTC 2024
Tests: 
Tests: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

emcbot · 2024-04-17T00:47:21Z

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Tue Apr 16 19:46:56 CDT 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Tue Apr 16 19:47:20 CDT 2024
Tests: 
Tests: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

emcbot · 2024-04-17T01:39:41Z

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Wed Apr 17 00:36:44 UTC 2024 on hfe11
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Wed Apr 17 00:37:30 UTC 2024
Tests: 
Tests: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

Build: SUCCESS
Build: Completed at Wed Apr 17 01:23:34 UTC 2024

Tests: Failed
Tests: Failed at Wed Apr 17 01:39:40 UTC 2024
Tests: 91% tests passed, 5 tests failed out of 54
1763 - test_gdasapp_soca_JGDAS_GLOBAL_OCEAN_ANALYSIS_VRFY (Failed)
1776 - test_gdasapp_atm_jjob_var_run (Failed)
1777 - test_gdasapp_atm_jjob_var_inc (Failed)
1778 - test_gdasapp_atm_jjob_var_final (Failed)
Tests: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

emcbot · 2024-04-17T02:02:47Z

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Tue Apr 16 19:46:56 CDT 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Tue Apr 16 19:47:20 CDT 2024
Tests: 
Tests: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

Build: SUCCESS
Build: Completed at Tue Apr 16 20:42:38 CDT 2024

Tests: Failed
Tests: Failed at Tue Apr 16 21:02:46 CDT 2024
Tests: 93% tests passed, 4 tests failed out of 54
1777 - test_gdasapp_atm_jjob_var_run (Failed)
1778 - test_gdasapp_atm_jjob_var_inc (Failed)
1779 - test_gdasapp_atm_jjob_var_final (Failed)
Tests: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

emcbot · 2024-04-17T02:49:27Z

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Wed Apr 17 01:42:32 UTC 2024 on hfe06
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Wed Apr 17 02:33:04 UTC 2024
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Wed Apr 17 02:49:26 UTC 2024
Tests: 91% tests passed, 5 tests failed out of 54
	1763 - test_gdasapp_soca_JGDAS_GLOBAL_OCEAN_ANALYSIS_VRFY (Failed)
	1776 - test_gdasapp_atm_jjob_var_run (Failed)
	1777 - test_gdasapp_atm_jjob_var_inc (Failed)
	1778 - test_gdasapp_atm_jjob_var_final (Failed)
Tests: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

emcbot · 2024-04-17T03:30:14Z

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Tue Apr 16 21:03:53 CDT 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Tue Apr 16 21:58:27 CDT 2024
---------------------------------------------------
Tests:                                  *Failed*
Tests: Failed at Tue Apr 16 22:30:14 CDT 2024
Tests: 91% tests passed, 5 tests failed out of 54
	1764 - test_gdasapp_soca_JGDAS_GLOBAL_OCEAN_ANALYSIS_VRFY (Failed)
	1777 - test_gdasapp_atm_jjob_var_run (Failed)
	1778 - test_gdasapp_atm_jjob_var_inc (Failed)
	1779 - test_gdasapp_atm_jjob_var_final (Failed)
Tests: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/1045/global-workflow/sorc/gdas.cd/build/log.ctest

guillaumevernieres

The test_gdasapp_util_ghrsst2ioda job is failing too but isn't reported as failed. Can you update the references @apchoiCMD ?
The vrfy task is failing with an issue reading the layer thicknesses, not sure why ...

This PR fixes the previous error, good enough to be merged. We'll comment out the verify test until one of us water people have time to look into it and fix the issue.

apchoiCMD · 2024-04-17T12:33:37Z

The test_gdasapp_util_ghrsst2ioda job is failing too but isn't reported as failed. Can you update the references @apchoiCMD ? The vrfy task is failing with an issue reading the layer thicknesses, not sure why ...

This PR fixes the previous error, good enough to be merged. We'll comment out the verify test until one of us water people have time to look into it and fix the issue.

My bad but your PR #1050 already includes a modified test reference file https://github.com/NOAA-EMC/GDASApp/pull/1050/files#diff-68603b0771f7acb935fa0d121599ea74718ba8012d0e7dc7c1ee1a192150d93e Do you want me to update before merging your PR? Thanks @guillaumevernieres

I fixed it!!!!

guillaumevernieres

👍

* upstream/develop: Get SOCA vrfy job working on Hera again (#1045) Get test data from a staged location on supported HPC Part Deux (#1052) Prepare observations for snow DA updates to the ensemble members (#998) Save basic stats in csv at each cycle (#1040) Fix bug for datetime in GHRSST Ioda Converter (#1027)

What the title says. Fixes #994 --------- Co-authored-by: Guillaume Vernieres <guillaume.vernieres@noaa.gov>

CoryMartin-NOAA added 3 commits April 11, 2024 11:55

update femps and fv3-jedi-lm

ea0e0d8

Merge branch 'develop' of https://github.com/NOAA-EMC/GDASApp into de…

9ea15df

…velop

Attempt to fix vrfy job on hera

cb56589

CoryMartin-NOAA added hera-GW-RT Queue for automated testing with global-workflow on Hera orion-GW-RT Queue for automated testing with global-workflow on Orion labels Apr 16, 2024

CoryMartin-NOAA self-assigned this Apr 16, 2024

guillaumevernieres approved these changes Apr 16, 2024

View reviewed changes

emcbot added orion-GW-RT-Failed Automated testing with global-workflow failed on Orion and removed orion-GW-RT-Running Automated testing with global-workflow running on Orion labels Apr 16, 2024

emcbot added hera-GW-RT-Failed Automated testing with global-workflow failed on Hera and removed hera-GW-RT-Running Automated testing with global-workflow running on Hera labels Apr 16, 2024

Merge branch 'develop' into bugfix/soca_vrfy

03b1b2d

guillaumevernieres added hera-GW-RT Queue for automated testing with global-workflow on Hera and removed hera-GW-RT-Failed Automated testing with global-workflow failed on Hera orion-GW-RT-Failed Automated testing with global-workflow failed on Orion labels Apr 16, 2024

guillaumevernieres added the orion-GW-RT Queue for automated testing with global-workflow on Orion label Apr 16, 2024

emcbot added hera-GW-RT-Failed Automated testing with global-workflow failed on Hera and removed hera-GW-RT-Running Automated testing with global-workflow running on Hera labels Apr 17, 2024

emcbot added orion-GW-RT-Failed Automated testing with global-workflow failed on Orion and removed orion-GW-RT-Running Automated testing with global-workflow running on Orion labels Apr 17, 2024

emcbot added the hera-GW-RT-Running Automated testing with global-workflow running on Hera label Apr 17, 2024

emcbot added the orion-GW-RT-Running Automated testing with global-workflow running on Orion label Apr 17, 2024

emcbot removed the hera-GW-RT-Running Automated testing with global-workflow running on Hera label Apr 17, 2024

emcbot removed the orion-GW-RT-Running Automated testing with global-workflow running on Orion label Apr 17, 2024

guillaumevernieres previously approved these changes Apr 17, 2024

View reviewed changes

bye bye vrfy (#1053)

71bf33a

I fixed it!!!!

guillaumevernieres dismissed their stale review via 71bf33a April 17, 2024 12:36

guillaumevernieres marked this pull request as ready for review April 17, 2024 12:41

guillaumevernieres approved these changes Apr 17, 2024

View reviewed changes

guillaumevernieres merged commit 1389383 into develop Apr 17, 2024

guillaumevernieres deleted the bugfix/soca_vrfy branch April 17, 2024 12:42

DavidNew-NOAA pushed a commit that referenced this pull request Jan 16, 2026

Get SOCA vrfy job working on Hera again (#1045)

01dd0a7

What the title says. Fixes #994 --------- Co-authored-by: Guillaume Vernieres <guillaume.vernieres@noaa.gov>

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CoryMartin-NOAA commented Apr 16, 2024

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Build: SUCCESS Build: Completed at Wed Apr 17 01:23:34 UTC 2024

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Build: SUCCESS Build: Completed at Tue Apr 16 20:42:38 CDT 2024

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Build: SUCCESS
Build: Completed at Wed Apr 17 01:23:34 UTC 2024

Build: SUCCESS
Build: Completed at Tue Apr 16 20:42:38 CDT 2024