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Releases: HadrienG/InSilicoSeq

v1.4.4

23 Oct 07:39
@HadrienG HadrienG
1.4.4
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v1.4.4

Bugfix release:

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v1.4.2

06 Jun 15:09
@HadrienG HadrienG
1.4.2
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v1.4.2

Bugfix release:

  • fix (again) for #96
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v1.4.1

03 Jun 07:49
@HadrienG HadrienG
1.4.1
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v1.4.1

Bugfix release:

  • --draft works again
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v1.4.0

31 May 07:39
@HadrienG HadrienG
1.4.0
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v1.4.0

iss generate"

  • New perfect mode to simulate error-free reads (#103)
  • allow gzip output with --compress/-z (#100)
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v1.3.6

14 May 06:30
@HadrienG HadrienG
1.3.6
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v1.3.6

Bugfix release:

  • InSilicoSeq is now compatible with numpy 1.6.3 (#101)
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v1.3.5

09 Apr 06:41
@HadrienG HadrienG
1.3.5
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v1.3.5

Bugfix release:

  • No more duplicated read names (#94)
  • Does not crash on deletions at the end of chr template anymore (#97) (Thanks @standage)
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v1.3.3

17 Dec 17:56
@HadrienG HadrienG
1.3.3
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v1.3.3

Bugfix release:

  • iss generate --ncbi is now much faster (#77)
  • iss generate should not fail to introduce substitutions error on lower case nucleotides anymore (#73)
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v1.3.1

21 Nov 06:24
@HadrienG HadrienG
1.3.1
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v1.3.1

Bug fixes:

  • iss generate doesn't crash when trying to delete a lowercase nucleotide anymore
  • iss generate doesn't crash when encountering some ambiguous nucleotides (B, V, H and D) anymore
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v1.3.0

15 Nov 10:23
@HadrienG HadrienG
1.3.0
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v1.3.0

iss generate:

  • --genomes accepts multiple input files
  • new, optional --draft option for input draft genomes (#71)
  • now accepts combinations of --genomes, --draft and --ncbi
  • new --seed argument for reproducibility (#75)
  • consistent number of reads (#74)

minor fixes

  • upgrade requests in Pipfile.lock
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Minor Release

19 Sep 11:50
@HadrienG HadrienG
1.2.1
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Minor Release

This is a bug fix release:

  • iss: now works with python 3.7 (#68)
  • iss generate: minor change to the read names to make BWA happy (#67 , thanks @alienzj for the PR 🎉 )
  • iss model: Do not crash on weird CIGAR strings anymore (#69)
  • iss model: aligned reads can now be of different lengths
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