Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

reproducibility #75

Closed
boris-dimitrov opened this issue Oct 20, 2018 · 2 comments
Closed

reproducibility #75

boris-dimitrov opened this issue Oct 20, 2018 · 2 comments
Assignees
@HadrienG
Labels
enhancement

Comments

@boris-dimitrov
Copy link

is it possible to make results reproducible by such techniques as specifying a random generator seed on the command line, and making the results invariant w.r.t. the number of cpu threads/processes?

this isn't super important, but may be nice to have
@HadrienG HadrienG self-assigned this Oct 26, 2018
@HadrienG HadrienG mentioned this issue Nov 14, 2018
Merged
6 tasks
HadrienG added a commit that referenced this issue Nov 14, 2018
@HadrienG
add --seed option (#75)
35c4ad7
@HadrienG
Copy link
Owner

added --seed option in 1.3.0. Note that while the generated reads should be identical across runs their order in the fastq files is not guaranteed

@boris-dimitrov
Copy link
Author

Thanks for adding this!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@HadrienG HadrienG

Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@HadrienG @boris-dimitrov