feat: Genotypes.check_maf()
method
#124
Merged
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See #19
This PR removes the
to_MAC()
method and the AAF field from thevariants
property of the Genotypes class. Both are breaking changes to the Genotypes API.Instead, we introduce a new
check_maf()
method, which offers a cleaner, more streamlined interface.This PR also uses
black
to reformat many of the files in our codebase to follow Python's PEP8 style standards. If I thought a file would require too many changes to bring it up to date with the standards, I just excluded it from formatting by listing it in theextend-exclude
section of ourpyproject.toml
file.Once this PR is merged, we'll be able to check the formatting of all of the code in our repository with a simple command (
black .
). Hopefully, this will make it easier to move forward with automated style checks in #117