Code

feat: Genotypes.check_maf() method#124

Code

Merged

aryarm merged 12 commits intomainCAST-genomics/haptools:mainfrom ref/genotypes-afCAST-genomics/haptools:ref/genotypes-afCopy head branch name to clipboardOct 25, 2022

+221-145

Commits

Commits on Oct 18, 2022

• remove aaf field from Genotypes objects

  Show description for 94e1f61
  aryarm

  committed
  94e1f61

• add method to check af

  aryarm

  committed
  156b2ed

Commits on Oct 19, 2022

• check MAF instead of non-REF AF

  aryarm

  committed
  c77bb1e

• add flag to warn instead of raise ValueError

  aryarm

  committed
  2ba000b

• fix auto-generated docs

  aryarm

  committed
  87df5c8

• refmt admix_storage with black

  aryarm

  committed
  7f7867a

• make region in validate_params() an optional arg

  aryarm

  committed
  e88c329

• refmt all test files and docs files with black

  aryarm

  committed
  ef36334

• exclude unformatted files from black

  aryarm

  committed
  8ccb127

• describe check_maf() in data API docs

  aryarm

  committed
  54abd6b

Commits on Oct 24, 2022

• fix GenotypesPLINK typo in haptools data API example

  aryarm

  authored
  111df55

• fix another typo - yikes

  aryarm

  authored
  0b89c93