Releases · zavolanlab/htsinfer

What's Changed

test: add unit tests for library source inference by @rohank63 in #90
test: add unit tests for library orientation by @rohank63 in #91
refactor: pass conf instances, not individual args #92 by @BorisYourich in #95
refactor: exception handling #94 by @balajtimate in #97
Infer polyA tail & Conda to Mamba by @BorisYourich in #102
refactor: wrap long line by @balajtimate in #112
test: design testing strategy by @balajtimate in #111
perf: add adapter fragment by @balajtimate in #114
ci: downgrade Cutadapt & silence warning by @uniqueg in #119
fix: remove transcript duplicates by @balajtimate in #117
perf: remove duplicate adapter fragments by @balajtimate in #122
perf: optimize read layout inference and defaults by @balajtimate in #124
perf: optimize STAR memory usage and read orientation defaults by @balajtimate in #125
ci: publish Docker image by @balajtimate in #128
feat: infer lib type if mate info not in seq IDs by @BorisYourich in #129
feat: infer additional statistics from read lengths by @balajtimate in #133
fix: add default to path_2_processed arg by @balajtimate in #137
Fix bugs by @uniqueg in #141
Conda-based Dockerfile & new exit status for unexpected errors by @uniqueg in #142
refactor: avoid duplicate mappings by @BorisYourich in #131
fix: update Pydantic version by @balajtimate in #146
feat: set default for records by @balajtimate in #148
feat: add tax_id parameter by @balajtimate in #147
fix: add processed sample paths to mapping by @balajtimate in #150
fix: correctly infer read stats from second mate by @balajtimate in #152
fix: infer library type relationship by @balajtimate in #157
feat: improve lib type inference for SRA PE samples by @balajtimate in #161
refactor: pre-release cleanup by @balajtimate in #162
build: create data package by @balajtimate in #163
build: add data dir to MANIFEST.in by @balajtimate in #164

Full Changelog: v0.9.0...v0.10.0

What's Changed

test: add unit tests for library source inference by @rohank63 in #90
test: add unit tests for library orientation by @rohank63 in #91
refactor: pass conf instances, not individual args #92 by @BorisYourich in #95
refactor: exception handling #94 by @balajtimate in #97
Infer polyA tail & Conda to Mamba by @BorisYourich in #102
refactor: wrap long line by @balajtimate in #112
test: design testing strategy by @balajtimate in #111
perf: add adapter fragment by @balajtimate in #114
ci: downgrade Cutadapt & silence warning by @uniqueg in #119
fix: remove transcript duplicates by @balajtimate in #117
perf: remove duplicate adapter fragments by @balajtimate in #122
perf: optimize read layout inference and defaults by @balajtimate in #124
perf: optimize STAR memory usage and read orientation defaults by @balajtimate in #125
ci: publish Docker image by @balajtimate in #128
feat: infer lib type if mate info not in seq IDs by @BorisYourich in #129
feat: infer additional statistics from read lengths by @balajtimate in #133
fix: add default to path_2_processed arg by @balajtimate in #137
Fix bugs by @uniqueg in #141
Conda-based Dockerfile & new exit status for unexpected errors by @uniqueg in #142
refactor: avoid duplicate mappings by @BorisYourich in #131
fix: update Pydantic version by @balajtimate in #146
feat: set default for records by @balajtimate in #148
feat: add tax_id parameter by @balajtimate in #147
fix: add processed sample paths to mapping by @balajtimate in #150
fix: correctly infer read stats from second mate by @balajtimate in #152
fix: infer library type relationship by @balajtimate in #157
feat: improve lib type inference for SRA PE samples by @balajtimate in #161
refactor: pre-release cleanup by @balajtimate in #162
build: create data package by @balajtimate in #163
build: add data dir to MANIFEST.in by @balajtimate in #164