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nextflow/25.10.2 package update#73396

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OddBloke merged 3 commits into
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staging-update-bot/nextflow.yaml
Dec 1, 2025
Merged

nextflow/25.10.2 package update#73396
OddBloke merged 3 commits into
mainfrom
staging-update-bot/nextflow.yaml

nextflow: drop superseded CVE remediations

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Octo STS / ci-diff-report succeeded Dec 1, 2025 in 0s

Package diff

Package diff

Details

Package Diffs

aarch64/nextflow-25.10.0-r0.apk -> aarch64/nextflow-25.10.2-r0.apk

📦 Package diff:

  &apk.Package{
  	Name:        "nextflow",
- 	Version:     "25.10.0-r0",
+ 	Version:     "25.10.2-r0",
  	Arch:        "aarch64",
  	Description: "A DSL for data-driven computational pipelines.",
  	... // 2 identical fields
  	Maintainer: "wolfi",
  	URL:        "",
  	Checksum: []uint8{
- 		0xb0, 0xaf, 0xf5, 0xa7, 0x5b, 0xde, 0xba, 0x73, 0xc2, 0x12, 0x7c, 0x97, 0x0e, 0x96, 0x80, 0xc3, // -|....[..s..|.....|
- 		0xf1, 0x31, 0xa7, 0xa7,                                                                         // -|.1..|
+ 		0xb2, 0xb6, 0xc1, 0xf0, 0x35, 0x35, 0x12, 0x10, 0x13, 0x14, 0x3b, 0x00, 0x6f, 0x9f, 0x8c, 0x90, // +|....55....;.o...|
+ 		0x53, 0xb9, 0x56, 0x14,                                                                         // +|S.V.|
  	},
  	Dependencies:     {"bash", "busybox", "cmd:bash", "curl", ...},
- 	Provides:         []string{"cmd:nextflow=25.10.0-r0"},
+ 	Provides:         []string{"cmd:nextflow=25.10.2-r0"},
  	InstallIf:        nil,
- 	Size:             36292895,
+ 	Size:             36291932,
- 	InstalledSize:    38718351,
+ 	InstalledSize:    38725194,
  	ProviderPriority: 0,
- 	BuildTime:        s"2025-10-24 22:15:16 +0000 UTC",
+ 	BuildTime:        s"2025-12-01 16:58:39 +0000 UTC",
- 	BuildDate:        1761344116,
+ 	BuildDate:        1764608319,
  	RepoCommit: strings.Join({
- 		"fe0f22d194d21acaa88a9a2c8fe2f3a077c1310d",
+ 		"525807901147d6800e4b72b5a58f74e84ee3905f",
  	}, ""),
  	Replaces: nil,
  	DataHash: "",
  }

➕ Added:

  • usr/lib/nextflow/nextflow-25.10.2-one.jar (644)
  • var/lib/db/sbom/nextflow-25.10.2-r0.spdx.json (644)

➖ Removed:

  • usr/lib/nextflow/nextflow-25.10.0-one.jar (644)
  • var/lib/db/sbom/nextflow-25.10.0-r0.spdx.json (644)

🔺 Changed:

.melange.yaml
- -rw-r--r-- 21250 2025-10-24 22:15:16 .melange.yaml
+ -rw-r--r-- 20636 2025-12-01 16:58:39 .melange.yaml
usr/bin/nextflow
- -rwxr-xr-x 17247 2025-10-24 22:15:16 nextflow
-   APK-TOOLS.checksum.SHA1: "940f3363c974da27b5b137589dfcf52c5366c421"
+ -rwxr-xr-x 17247 2025-12-01 16:58:39 nextflow
+   APK-TOOLS.checksum.SHA1: "cd25cceba0a93fc673d10cba75c3499011e4f29d"

aarch64/nextflow-compat-25.10.0-r0.apk -> aarch64/nextflow-compat-25.10.2-r0.apk

📦 Package diff:

  &apk.Package{
  	Name:        "nextflow-compat",
- 	Version:     "25.10.0-r0",
+ 	Version:     "25.10.2-r0",
  	Arch:        "aarch64",
  	Description: "Compatibility package for Nextflow",
  	... // 2 identical fields
  	Maintainer: "wolfi",
  	URL:        "",
  	Checksum: []uint8{
- 		0xd7, 0x2b, 0xe1, 0x05, 0xb3, 0x54, 0xa3, 0xe8, 0x85, 0xa1, 0x9e, 0xca, 0x7f, 0xf3, 0x7a, 0x23, // -|.+...T........z#|
- 		0xca, 0xc5, 0xe3, 0xe9,                                                                         // -|....|
+ 		0x8e, 0xbc, 0xd2, 0xae, 0xdf, 0x00, 0x5b, 0x6d, 0x69, 0xc6, 0x83, 0x6e, 0x20, 0xf3, 0x20, 0xf9, // +|......[mi..n . .|
+ 		0x33, 0x9a, 0x13, 0x04,                                                                         // +|3...|
  	},
  	Dependencies:     {"cmd:bash"},
  	Provides:         nil,
  	InstallIf:        nil,
- 	Size:             9169,
+ 	Size:             8957,
  	InstalledSize:    50658,
  	ProviderPriority: 0,
- 	BuildTime:        s"2025-10-24 22:15:16 +0000 UTC",
+ 	BuildTime:        s"2025-12-01 16:58:39 +0000 UTC",
- 	BuildDate:        1761344116,
+ 	BuildDate:        1764608319,
  	RepoCommit: strings.Join({
- 		"fe0f22d194d21acaa88a9a2c8fe2f3a077c1310d",
+ 		"525807901147d6800e4b72b5a58f74e84ee3905f",
  	}, ""),
  	Replaces: nil,
  	DataHash: "",
  }

➕ Added:

  • var/lib/db/sbom/nextflow-compat-25.10.2-r0.spdx.json (644)

➖ Removed:

  • var/lib/db/sbom/nextflow-compat-25.10.0-r0.spdx.json (644)

🔺 Changed:

.melange.yaml
- -rw-r--r-- 21250 2025-10-24 22:15:16 .melange.yaml
+ -rw-r--r-- 20636 2025-12-01 16:58:39 .melange.yaml

x86_64/nextflow-25.10.0-r0.apk -> x86_64/nextflow-25.10.2-r0.apk

📦 Package diff:

  &apk.Package{
  	Name:        "nextflow",
- 	Version:     "25.10.0-r0",
+ 	Version:     "25.10.2-r0",
  	Arch:        "x86_64",
  	Description: "A DSL for data-driven computational pipelines.",
  	... // 2 identical fields
  	Maintainer: "wolfi",
  	URL:        "",
  	Checksum: []uint8{
- 		0x6b, 0x79, 0xce, 0x08, 0x72, 0x08, 0xc7, 0x66, 0x16, 0xd2, 0x2d, 0xf6, 0x06, 0x10, 0xf9, 0x45, // -|ky..r..f..-....E|
- 		0x56, 0x22, 0xae, 0x9b,                                                                         // -|V"..|
+ 		0x75, 0xa6, 0xe6, 0xbb, 0x83, 0x9a, 0x74, 0xe8, 0x89, 0x4d, 0xbc, 0x46, 0x0a, 0xee, 0xc8, 0xe5, // +|u.....t..M.F....|
+ 		0xbf, 0x94, 0x41, 0x86,                                                                         // +|..A.|
  	},
  	Dependencies:     {"bash", "busybox", "cmd:bash", "curl", ...},
- 	Provides:         []string{"cmd:nextflow=25.10.0-r0"},
+ 	Provides:         []string{"cmd:nextflow=25.10.2-r0"},
  	InstallIf:        nil,
- 	Size:             36292877,
+ 	Size:             36291907,
- 	InstalledSize:    38718354,
+ 	InstalledSize:    38725193,
  	ProviderPriority: 0,
- 	BuildTime:        s"2025-10-24 22:15:16 +0000 UTC",
+ 	BuildTime:        s"2025-12-01 16:58:39 +0000 UTC",
- 	BuildDate:        1761344116,
+ 	BuildDate:        1764608319,
  	RepoCommit: strings.Join({
- 		"fe0f22d194d21acaa88a9a2c8fe2f3a077c1310d",
+ 		"525807901147d6800e4b72b5a58f74e84ee3905f",
  	}, ""),
  	Replaces: nil,
  	DataHash: "",
  }

➕ Added:

  • usr/lib/nextflow/nextflow-25.10.2-one.jar (644)
  • var/lib/db/sbom/nextflow-25.10.2-r0.spdx.json (644)

➖ Removed:

  • usr/lib/nextflow/nextflow-25.10.0-one.jar (644)
  • var/lib/db/sbom/nextflow-25.10.0-r0.spdx.json (644)

🔺 Changed:

.melange.yaml
- -rw-r--r-- 21214 2025-10-24 22:15:16 .melange.yaml
+ -rw-r--r-- 20600 2025-12-01 16:58:39 .melange.yaml
usr/bin/nextflow
- -rwxr-xr-x 17247 2025-10-24 22:15:16 nextflow
-   APK-TOOLS.checksum.SHA1: "940f3363c974da27b5b137589dfcf52c5366c421"
+ -rwxr-xr-x 17247 2025-12-01 16:58:39 nextflow
+   APK-TOOLS.checksum.SHA1: "cd25cceba0a93fc673d10cba75c3499011e4f29d"

x86_64/nextflow-compat-25.10.0-r0.apk -> x86_64/nextflow-compat-25.10.2-r0.apk

📦 Package diff:

  &apk.Package{
  	Name:        "nextflow-compat",
- 	Version:     "25.10.0-r0",
+ 	Version:     "25.10.2-r0",
  	Arch:        "x86_64",
  	Description: "Compatibility package for Nextflow",
  	... // 2 identical fields
  	Maintainer: "wolfi",
  	URL:        "",
  	Checksum: []uint8{
- 		0x00, 0xce, 0x5d, 0x17, 0xed, 0x57, 0x36, 0x4b, 0x80, 0x57, 0x92, 0x23, 0xa5, 0xfa, 0x3b, 0xe8, // -|..]..W6K.W.#..;.|
- 		0x9c, 0x19, 0x1e, 0x26,                                                                         // -|...&|
+ 		0xae, 0x0e, 0xbd, 0x60, 0x1d, 0xdb, 0x34, 0xea, 0xd4, 0xc4, 0x2b, 0xab, 0x7c, 0x7f, 0xc5, 0x16, // +|...`..4...+.|...|
+ 		0x5a, 0x0c, 0x32, 0x68,                                                                         // +|Z.2h|
  	},
  	Dependencies:     {"cmd:bash"},
  	Provides:         nil,
  	InstallIf:        nil,
- 	Size:             9141,
+ 	Size:             8928,
  	InstalledSize:    50657,
  	ProviderPriority: 0,
- 	BuildTime:        s"2025-10-24 22:15:16 +0000 UTC",
+ 	BuildTime:        s"2025-12-01 16:58:39 +0000 UTC",
- 	BuildDate:        1761344116,
+ 	BuildDate:        1764608319,
  	RepoCommit: strings.Join({
- 		"fe0f22d194d21acaa88a9a2c8fe2f3a077c1310d",
+ 		"525807901147d6800e4b72b5a58f74e84ee3905f",
  	}, ""),
  	Replaces: nil,
  	DataHash: "",
  }

➕ Added:

  • var/lib/db/sbom/nextflow-compat-25.10.2-r0.spdx.json (644)

➖ Removed:

  • var/lib/db/sbom/nextflow-compat-25.10.0-r0.spdx.json (644)

🔺 Changed:

.melange.yaml
- -rw-r--r-- 21214 2025-10-24 22:15:16 .melange.yaml
+ -rw-r--r-- 20600 2025-12-01 16:58:39 .melange.yaml