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12 changes: 2 additions & 10 deletions nextflow.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
package:
name: nextflow
version: "25.10.0"
version: "25.10.2"
epoch: 0
description: A DSL for data-driven computational pipelines.
copyright:
Expand Down Expand Up @@ -28,17 +28,9 @@ pipeline:
- uses: git-checkout
with:
repository: https://github.com/nextflow-io/nextflow.git
expected-commit: 2db01e6e9cf8fe266e729c424e2d97cff4e43de2
expected-commit: c03082c9b816774c799660d22c2b56d72218fddc
tag: v${{package.version}}

- uses: patch
with:
patches: logback.patch

- runs: |
# CVE-2025-48924 GHSA-j288-q9x7-2f5v
sed -i -e 's|org.apache.commons:commons-lang3=3.12.0|org.apache.commons:commons-lang3=3.18.0|g' plugins/nf-wave/build.gradle

- runs: |
sed -i 's/jar\.enabled = false/jar.enabled = true/' build.gradle
./gradlew build -x test --no-daemon
Expand Down
23 changes: 0 additions & 23 deletions nextflow/eclipse-GHSA-vrpq-qp53-qv56-fix.patch

This file was deleted.

15 changes: 0 additions & 15 deletions nextflow/logback.patch

This file was deleted.

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