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21 Open 19 Closed
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Issues list

Add (minimal) ProForma support in mokapot.picked_protein.strip_peptides
#130 opened Oct 24, 2024 by RalfG
[Issue] docker build stage does not get tested in CI
#129 opened Oct 8, 2024 by jspaezp
Also load scaler when loading model
#124 opened Aug 1, 2024 by gessulat
1 task
Chunksize should be derived from MEMORY env variable
#123 opened Aug 1, 2024 by gessulat
3 tasks
Consolidate naming of LinearPSMDataset OnDiskPSMDataset
#122 opened Aug 1, 2024 by gessulat
Revert file suffix change for output files
#121 opened Aug 1, 2024 by gessulat
1 task
Remove MSAID's SQLite output support
#120 opened Jul 26, 2024 by gessulat
[Feature Request] mokapot output as a pepXML file
#118 opened Apr 20, 2024 by sciordia
Enzyme Free Digestion results in "0 digested proteins"
#117 opened Dec 18, 2023 by jonathan-krieger-bruker
4
Issue with decoy prefix when trying to get protein level confidence.
#114 opened Nov 9, 2023 by louisebuur
2
Can't get protein level confidence. "IndexError: index -3 is out of bounds for axis 0 with size 1"
#113 opened Nov 1, 2023 by roushrsh
3
Mokapot sub commands and brew() restructuring
#110 opened Oct 4, 2023 by gessulat
4 tasks
File schema via pydantic
#109 opened Sep 21, 2023 by gessulat
3 tasks
3
WIP: intermediary file format specification
#108 opened Sep 21, 2023 by gessulat
3 tasks
Multi-threaded writing of output files
#107 opened Sep 21, 2023 by gessulat
2 tasks
2
Decoy Prefix results in many unmapped peptides
#102 opened Jun 19, 2023 by jonathan-krieger-bruker
1
[Question] executable(e.g. pyinstaller) enhancement New feature or request
#101 opened Apr 19, 2023 by timosachsenberg
7
Combine mokapot scores from multiple files enhancement New feature or request
#97 opened Apr 6, 2023 by wfondrie
@wfondrie
[Upgrade] Migrate from Pandas to Polars enhancement New feature or request
#89 opened Jan 26, 2023 by wfondrie
@wfondrie
3
[Feature Request] Explicit support for DIA results.
#37 opened Aug 12, 2021 by wfondrie
[Upgrade] Use pytest-datadir to manage data files for tests
#34 opened Jul 15, 2021 by wfondrie
2
ProTip! Exclude everything labeled bug with -label:bug.