Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: integration of strucvars from REEV (#1300) #1379

Merged
merged 1 commit into from
Feb 23, 2024

Conversation

holtgrewe
Copy link
Collaborator

No description provided.

@holtgrewe holtgrewe enabled auto-merge (squash) February 23, 2024 15:03
Copy link

deps-report 🔍

Commit scanned: 3c7ed06
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

2 dependencies have vulnerabilities 😱
Dependency Advisory Versions impacted
aiohttp (transitive) The vulnerability lies in the improper configuration of static resource resolution when aiohttp is used as a web server. It occurs when the follow_symlinks option is enabled without proper validation, leading to directory traversal vulnerabilities. Unauthorized access to arbitrary files on the system could potentially occur. The affected versions are >1.0.5, and the issue was patched in version 3.9.2. As a workaround, it is advised to disable the follow_symlinks option outside of a restricted local development environment, especially in a server accepting requests from remote users. Using a reverse proxy server to handle static resources is also recommended. aio-libs/aiohttp@1c33594 >1.0.5,<3.9.2
sqlalchemy Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563 <2.0.0b1

Outdated dependencies

52 outdated dependencies found (including 21 outdated major versions)😢
Dependency Installed version Latest version
argon2-cffi (transitive) 21.3.0 23.1.0
billiard (transitive) 3.6.4.0 4.2.0
coverage (dev,transitive) 6.5.0 7.4.2
crispy-bootstrap4 (transitive) 2022.1 2023.1
django 3.2.24 5.0.2
faker (dev,transitive) 22.5.1 23.2.1
flake8 (dev) 6.1.0 7.0.0
fsspec (transitive) 2023.12.2 2024.2.0
future (dev,transitive) 0.18.3 1.0.0
lxml 4.9.4 5.1.0
mistune (transitive) 2.0.5 3.0.2
protobuf 3.20.3 4.25.3
pydantic 1.10.14 2.6.1
s3fs 2023.12.2 2024.2.0
setuptools (transitive) 67.6.1 69.1.1
sphinx (transitive) 6.2.1 7.2.6
sphinx-rtd-theme (transitive) 1.2.2 2.0.0
sqlalchemy 1.4.51 2.0.27
tzdata (transitive) 2023.4 2024.1
unidecode (transitive) 0.4.21 1.3.8
xmlschema (transitive) 2.5.1 3.0.2
Dependency Installed version Latest version
aiobotocore (transitive) 2.11.0 2.11.2
aiohttp (transitive) 3.9.1 3.9.3
botocore (transitive) 1.34.22 1.34.48
celery (transitive) 5.2.7 5.3.6
cryptography (transitive) 42.0.3 42.0.4
django-autocomplete-light (transitive) 3.9.4 3.9.7
django-crispy-forms (transitive) 2.0 2.1
django-db-file-storage (transitive) 0.5.5 0.5.6.1
django-debug-toolbar 4.2.0 4.3.0
django-environ (transitive) 0.10.0 0.11.2
django-iconify (transitive) 0.1.1 0.4
django-model-utils (transitive) 4.3.1 4.4.0
django-plugins-bihealth 0.4.0 0.5.2
django-postgres-copy 2.3.7 2.7.4
django-pydantic-field 0.3.0 0.3.3
docutils (transitive) 0.18.1 0.20.1
ipython (dev,transitive) 8.20.0 8.22.1
markdown (transitive) 3.4.1 3.5.2
multidict (transitive) 6.0.4 6.0.5
numpy 1.26.3 1.26.4
prettytable 3.9.0 3.10.0
pyflakes (dev,transitive) 3.1.0 3.2.0
requests-http-signature 0.2.0 0.7.1
selenium (dev) 4.17.2 4.18.1
sentry-sdk 1.39.2 1.40.5
tqdm 4.66.1 4.66.2
universal-pathlib 0.1.4 0.2.1
urllib3 (transitive) 2.0.7 2.2.1
versioneer (transitive) 0.28 0.29
wheel (transitive) 0.40.0 0.42.0
xlsxwriter 3.1.9 3.2.0

Logs

Copy link

codecov bot commented Feb 23, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 70.54%. Comparing base (64c99e6) to head (3c7ed06).

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1379      +/-   ##
==========================================
+ Coverage   70.44%   70.54%   +0.10%     
==========================================
  Files         383      381       -2     
  Lines       24622    24563      -59     
  Branches     1578     1570       -8     
==========================================
- Hits        17344    17329      -15     
+ Misses       7278     7234      -44     
Files Coverage Δ
cases/vueapp/src/components/CaseDetail/Content.vue 93.93% <ø> (-0.35%) ⬇️
...eapp/src/components/CaseDetail/PaneAnnotations.vue 46.15% <ø> (ø)

@holtgrewe holtgrewe merged commit c596e0c into main Feb 23, 2024
16 checks passed
@holtgrewe holtgrewe deleted the integrate-reev-strucvars branch February 23, 2024 15:13
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant