address unreasonable large F0 and F1 in entrainment calculation by AnningCheng-NOAA · Pull Request #2971 · ufs-community/ufs-weather-model

AnningCheng-NOAA · 2025-11-05T18:29:04Z

Commit Queue Requirements:

This PR addresses a relevant WM issue (if not, create an issue).
All subcomponent pull requests (if any) have been reviewed by their code managers.
Run the full Intel+GNU RT suite (compared to current baselines), preferably on Ursa (Derecho or Hercules are acceptable alternatives). Exceptions: documentation-only PRs, CI-only PRs, etc.
- Commit log file w/full results from RT suite run (if applicable).
- Verify that test_changes.list indicates which tests, if any, are changed by this PR. Commit test_changes.list, even if it is empty.
Fill out all sections of this template.

Description:

This PR addresses F0 and F1, two parameters on deep convection organization, could be very large and cause model crash. Addressing issue #2968

Commit Message:

* UFSWM - address unreasonable large F0 and F1 in entrainment calculation - 2971
  *
  * UFSATM - address unreasonable large F0 and F1 in entrainment calculation - 1033
    * ccpp-physics - address unreasonable large F0 and F1 in entrainment calculation - 327
    *

Priority:

Critical Bugfix: Reason
High: Reason the fix is physically meaningful and could prevent UFS from unexpected crashes.
Normal

Git Tracking

UFSWM:

Closes #Problem with F0 and F1 in SAS Convection Scheme #2968

Sub component Pull Requests:

ccpp-physics: address unreasonable large F0 and F1 in entrainment calculation ccpp-physics#327
UFSATM: Address unreasonable large F0 and F1 in entrainment calculation NOAA-EMC/ufsatm#1033
UFSATM hash fix: sync up physics hash NOAA-EMC/ufsatm#1040

UFSWM Blocking Dependencies:

Blocked by #
None

Documentation:

Changes

Regression Test Changes (Please commit test_changes.list):

PR Adds New Tests/Baselines.
[X ] PR Updates/Changes Baselines, when DO_NGW_EC=T
[] No Baseline Changes.

Input data Changes:

None.

Library Changes/Upgrades:

Required
- Library names w/versions:
- Git Stack Issue (JCSDA/spack-stack#)
No Updates

Testing Log:

gspetro-NOAA · 2025-11-10T14:00:01Z

Hi @AnningCheng-NOAA ! To prepare this PR for the Commit Queue, could you please:

Commit the test_changes.list file (it does not appear in changed files)
Update the commit message
Link an associated UFSATM PR. For changes to CCPP to appear in UFSATM, there needs to be a UFSATM PR that updates the CCPP hash.
Link an issue that this PR closes. It could be an issue from a subrepository if that is more appropriate.

I also see a stochastic_physics submodule change listed in this PR. I think you may be using an old hash and simply need to update to the head of the stochastic_physics master branch. However, if changes to stochastic physics are intended, a corresponding PR would need to be linked.

AnningCheng-NOAA · 2025-11-10T14:45:52Z

just commit test_changes.list. It has 0 bytes size.

The issues and PRs related to this PR are
#2968
#2971
NOAA-EMC/ufsatm#1033
ufs-community/ccpp-physics#327
Please advise how to link them.

There is no change on stochastic physics for this PR.

gspetro-NOAA · 2025-11-10T20:02:04Z

@AnningCheng-NOAA Thanks! For the issues, you can just add them in the PR description above to the Git Tracking section where it says "UFSWM: Closes # "
And for the PRs, you'd add the UFSATM one under "Sub component Pull Requests: UFSATM."

AnningCheng-NOAA · 2025-11-10T20:40:56Z

@gspetro-NOAA done.

gspetro-NOAA · 2025-11-10T21:43:58Z

@gspetro-NOAA done.

Thanks! You'll still need to add a commit message in the "Commit Message" section of the PR Description. We use that when merging the PR into the WM.
If you can sync your branch with develop, I can perform some final testing and request approvals on the sub-PRs, and then we can get this into the commit queue. In particular, the stochastic_physics hash should be updated to aea3150, and UFSATM should be updated to b667c11.

gspetro-NOAA · 2025-11-12T19:07:29Z

@AnningCheng-NOAA Thanks for updating UFSATM. I cloned your branch and updated the stochastic_physics hash with the following procedure:

cd ufs-weather-model/stochastic_physics/
git fetch origin
git checkout aea3150
cd ..
git add stochastic_physics
git commit -m "update stochastic physics hash"
git push origin entr_f0f1

(Note that aea3150 is the most recent hash on the master branch.)
I'll run some pretests on Ursa. To do this, I'm running:

cd ufs-weather-model/tests
nohup ./rt.sh -a epic -e &

In the future, you can do the same (substituting your actual account name for epic). Then you'd push the logs and the test_changes.list file.

AnningCheng-NOAA · 2025-11-12T19:28:06Z

@Gillian Petro - NOAA Affiliate ***@***.***> Thank you! This is really helpful and will do next time.

…

On Wed, Nov 12, 2025 at 2:07 PM Gillian Petro ***@***.***> wrote: *gspetro-NOAA* left a comment (ufs-community/ufs-weather-model#2971) <#2971 (comment)> @AnningCheng-NOAA <https://github.com/AnningCheng-NOAA> Thanks for updating UFSATM. I cloned your branch and updated the stochastic_physics hash with the following procedure: cd ufs-weather-model/stochastic_physics/ git fetch origin git checkout aea3150 cd .. git add stochastic_physics git commit -m "update stochastic physics hash" git push origin entr_f0f1 I'll run some pretests on Ursa. To do this, I'm running: cd ufs-weather-model/tests nohup ./rt.sh -a epic -e & In the future, you can do the same (substituting your actual account name for epic). Then you'd push the logs and the test_changes.list file. — Reply to this email directly, view it on GitHub <#2971 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALQPMIJLAH2LEDIIMGCV35D34OAQPAVCNFSM6AAAAACLHZYDM6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTKMRTGQ4DSNRRGM> . You are receiving this because you were mentioned.Message ID: ***@***.***>

gspetro-NOAA · 2025-11-13T17:01:44Z

@AnningCheng-NOAA In my testing on Ursa, only the DATM tests are compiling successfully and running. Everything else failed in compile. I will try to reclone and rerun, just in case it was a fluke, and something went wrong in the cloning. However, in the meantime, you can look at my run directory and the log files in my test directory:

/scratch3/NAGAPE/epic/Gillian.Petro/ursa/RTs/ufs-wm/pretests/2971/tests/logs/RegressionTests_ursa.log
/scratch3/NAGAPE/epic/Gillian.Petro/ursa/RTs/ufs-wm/pretests/2971/tests/logs/log_ursa/*.log
/scratch4/NAGAPE/epic/Gillian.Petro/stmp/RT_RUNDIRS/Gillian.Petro/FV3_RT/rt_40110/

In the run directory (rt_40110), for each compile job, there is a compile* subdirectory that contains err and out files, which will likely tell you more about the errors and progression of each job.

AnningCheng-NOAA · 2025-11-13T17:34:59Z

@Gillian Petro - NOAA Affiliate ***@***.***> The errors come from UFSATM/io/post_nems_routines.F90, which I have not made any changes to. Something to do with allocate_all_upp_mod loading. I has just run a case at /scratch3/NCEPDEV/global/Anning.Cheng/tmp/ufs-weather-model/tests /scratch4/NCEPDEV/stmp/Anning.Cheng/RT_RUNDIRS/Anning.Cheng/FV3_RT/rt_1693049/ There is no problem compiling.

…

On Thu, Nov 13, 2025 at 12:02 PM Gillian Petro ***@***.***> wrote: *gspetro-NOAA* left a comment (ufs-community/ufs-weather-model#2971) <#2971 (comment)> @AnningCheng-NOAA <https://github.com/AnningCheng-NOAA> In my testing on Ursa, only the DATM tests are compiling successfully and running. Everything else failed in compile. I will try to reclone and rerun, just in case it was a fluke, and something went wrong in the cloning. However, in the meantime, you can look at my run directory and the log files in my test directory: /scratch3/NAGAPE/epic/Gillian.Petro/ursa/RTs/ufs-wm/pretests/2971/tests/logs/RegressionTests_ursa.log /scratch3/NAGAPE/epic/Gillian.Petro/ursa/RTs/ufs-wm/pretests/2971/tests/logs/log_ursa/*.log /scratch4/NAGAPE/epic/Gillian.Petro/stmp/RT_RUNDIRS/Gillian.Petro/FV3_RT/rt_40110/ In the run directory (rt_40110), for each compile job, there is a compile* subdirectory that contains err and out files, which will likely tell you more about the errors and progression of each job. — Reply to this email directly, view it on GitHub <#2971 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALQPMIJN6IE5I54HF76OKIL34S2SVAVCNFSM6AAAAACLHZYDM6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTKMRYG44TQNBWHA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

gspetro-NOAA · 2025-11-13T17:41:11Z

That is a UPP-related file, and now I'm seeing that your UPP hash is out-of-date, so that's likely the reason. Could you try to update your hash by adapting the stochastic_physics instructions above? UPP should be pointing to hash 1a16f94. Meanwhile, I'll go check that all other components are up-to-date.

gspetro-NOAA · 2025-11-13T18:45:57Z

CCPP physics and framework need hash updates. UFSATM needs another update due to the recently merged PR. So does CMEPS.

FernandoAndrade-NOAA · 2025-11-20T22:15:13Z

Note: control_p8_ugwpv1_tempo_aerosol_hail_intel passed after recreation, added to test_changes file.

jkbk2004 · 2025-11-21T18:22:58Z

@AnningCheng-NOAA @grantfirl new ufsatm hash is NOAA-EMC/ufsatm@a317ee1

jkbk2004 · 2025-11-21T21:33:27Z

@AnningCheng-NOAA @grantfirl we need to fix/sync physics hash thru NOAA-EMC/ufsatm#1040. sorry about the incident. @BrianCurtis-NOAA @FernandoAndrade-NOAA @gspetro-NOAA FYI

gspetro-NOAA · 2025-11-24T17:31:18Z

@AnningCheng-NOAA @grantfirl NOAA-EMC/ufsatm#1040 (with the hash fix) was merged. Could you revert .gitmodules and update the UFSATM hash (bba1bda)?

AnningCheng-NOAA · 2025-11-24T17:52:21Z

@Gillian Petro - NOAA Affiliate ***@***.***> done

…

On Mon, Nov 24, 2025 at 12:31 PM Gillian Petro ***@***.***> wrote: *gspetro-NOAA* left a comment (ufs-community/ufs-weather-model#2971) <#2971 (comment)> @AnningCheng-NOAA <https://github.com/AnningCheng-NOAA> @grantfirl <https://github.com/grantfirl> NOAA-EMC/ufsatm#1040 <NOAA-EMC/ufsatm#1040> (with the hash fix) was merged. Could you revert .gitmodules and update the UFSATM hash? — Reply to this email directly, view it on GitHub <#2971 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALQPMINNF6TGTMF3MCBQIUD36M6HZAVCNFSM6AAAAACLHZYDM6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTKNZRHE2DMMRYHE> . You are receiving this because you were mentioned.Message ID: ***@***.***>

@JongilHan66

* Update DATM meshes and switch to bilinear mapping; Reinstate med restarts for 4 tests after update to ESMF 8.8 (was ufs-community#2796) (ufs-community#2733) * UFSWM - Add DATM meshes which contain no land mask * UFSWM - Reinstate comparison of mediator restart files in 4 tests * CMEPS - Map DATM states bilinearly to OCN and ICE * Update GOCART to v2.4.3 (ufs-community#2819) * UFSWM - updated to GOCART v2.4.3 * GOCART - updated to GOCART v2.4.3 * Create a user-friendly "process model" testing capability + update MOM6 to its main repo. 20250801 commit ufs-community#2849 (ufs-community#2719) * UFSWM - Adds a doubly-periodic "process model" capability to run physics in a simple environment * UFSWM - Ursa job card and test resource update * UFSWM - Jenkins file update: ORT scratch3 and fix for platform log handling * FV3 - Adds a doubly-periodic "process model" capability to run physics in a simple environment * atmos_cubed_sphere - Adds a doubly-periodic "process model" capability to run physics in a simple environment * MOM6 - update MOM6 to its main repo. 20250801 commit --------- Co-authored-by: Larissa Reames <larissa.reames@noaa.gov> Co-authored-by: Jong Kim <jong.kim@noaa.gov> Co-authored-by: Kris Booker <kristopher.booker@tomorrow.io> Co-authored-by: jiandewang <jiande.wang@noaa.gov> Co-authored-by: FernandoAndrade-NOAA <Fernando.Andrade-maldonado@noaa.gov> * Add two-way ocean-wave coupling feature to the HAFS applications (ufs-community#2584) * UFS-WM - ecflow update on gaeac6 * CMEPS - CMEPS is updated to transfer ocean-current fields from MOM6 to WW3 and to transfer the Stokes drift components from WW3 to MOM6 for the HAFS applications. * MOM6 - MOM6 cap is updated to convert a missing value to zero for the imported Stokes drift components. * WW3 - WW3 cap is updated to convert a missing value to zero for the imported ocean-current fields for the ufs.hafs applications. --------- Co-authored-by: Natalie Perlin <Natalie.Perlin@noaa.gov> * Fix conus13km tests restart and decomposition reproducibility + Update the detection of Hera/Ursa ufs-community#2858 (ufs-community#2753) * UFSWM - Fix conus13km tests restart and decomposition reproducibility * UFSWM - Update the detection of Hera/Ursa * AQM - hash update 5d19f59 * FV3 - Fix conus13km tests restart reproducibility * ccpp-physics - Fix the setting of the land mask used in interpolating GLDAS soil data to the model grid --------- Co-authored-by: DavidHuber-NOAA <david.huber@noaa.gov> * FV3: Fix Prate_avg and UPP call freq + Fixing repo sync check with proper if...else block and re-instatiatin… ufs-community#2859 (ufs-community#2836) * UFSWM - repo_check.sh update * FV3 - Fixes Prate_avg, UPP call frequencies, and makes restart controls a single variable * Update CICE through 2025-07 and switch to ice history variables with expected ranges. Sync of WW3 develop to dev/ufs-weather-model (ufs-community#2852) * UFSWM - Update CICE and switch to _ai ice history variables. Sync of WW3 develop to dev/ufs-weather-model * CICE - Update CICE through 2025-07 * WW3 - Sync of WW3 develop to dev/ufs-weather-model, includes removal of GOTOs and fixes for compiler --------- Co-authored-by: Jessica Meixner <Jessica.Meixner@noaa.gov> * Fix Restart IAU and Ultra-Low Reproducibility Issues by Adding Control Parameter to Restart File (ufs-community#2851) * UFSWM - Fix restart IAU and Ultra-Low reproducibility issues by adding control parameter to restart file * WW3 - Add optional control parameter to restart file to ensure consistent IAU and ultra-low reproducibility behavior. * Add FV3 grid mask for regional domains to speed up nearest n. interpolation; Update CMEPS and CDEPS (ufs-community#2862) (ufs-community#2818) * UFSWM - Add FV3 grid mask to regional output domains that indicates grid points outside the computational domain * FV3 - Add FV3 grid mask to regional output domains that indicates grid points outside the computational domain * CDEPS - update to ESCOMP/main (2025-08) * CMEPS - update to ESCOMP/main --------- Co-authored-by: Denise Worthen <denise.worthen@noaa.gov> * MPAS dycore + Atmosphere Generalization & Update RAP tests to FHMAX=12 (ufs-community#2780) * UFSWM - Initial implementation of the MPAS dynamical core in the UWM atmosphere; shorten RAP tests to 12 hrs * CMEPS - Changes for the renaming of FV3 to UFSATM * noahmp - Changes for the renaming of FV3 to UFSATM * UFSATM - Initial implementation of the MPAS dynamical core in the atmospheric component of the UWM. --------- Co-authored-by: Gillian Petro <gillian.petro@noaa.gov> Co-authored-by: Kris Booker <kristopher.booker@tomorrow.io> Co-authored-by: JONG KIM <jong.kim@noaa.gov> Co-authored-by: epic-cicd-jenkins <ecc.platform@noaa.gov> Co-authored-by: Fernando Andrade - NOAA <121964418+FernandoAndrade-NOAA@users.noreply.github.com> Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov> Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov> * Use container with spack stack 1.9.2 (ufs-community#2870) * UFS-WM - add modulefile for container * Fix default cdmbgwd settings (ufs-community#2788) * UFSWM - Fix cdmbgwd issue in default_vars * Scale-aware 3DTKE EDMF and TTE-EDMF GFS PBL related updates (ufs-community#2806) * UFSWM - Scale-aware 3DTKE EDMF GFS PBL related updates/modifications and enable it being used with TTE-EMDF and use_lpt option. (from @JongilHan66, @zhup01, @samuelkyfung) * FV3 - Scale-aware 3DTKE EDMF GFS PBL related updates/modifications and enable it being used with TTE-EMDF and use_lpt option. (from @JongilHan66, @zhup01, @samuelkyfung) * ccpp-physics - Update scale-aware 3DTKE EDMF (from @JongilHan66, @zhup01, @samuelkyfung) and introduce TTE-EDMF in GFS PBL scheme (from @JongilHan66). * atmos_cubed_sphere - Scale-aware 3DTKE EDMF GFS PBL related updates/modifications from @JongilHan66, @zhup01, @samuelkyfung. * Introduce tuning parameter for convective cloud liquid for GFSv17/GEFSv13/SFSv1 (ufs-community#2872) * UFSWM - point to updated FV * FV3 - point to updated ccpp-physics * ccpp-physics - physics changes in saSAS * update mom6 to its main repo. 20250818 commit (ufs-community#2866) * MOM6 - update MOM6 to its main repo. 20250818 (default parameter changes) and cleanup MOM_input. * Add ENABLE_BUGS_BY_DEFAULT = False for all resolution settings and removed all "bug" flags in current MOM_input. * DEFAULT_ANSWER_DATA is set to 20250818 but WAVE_INTERFACE_DATA is set to 20230101 * Equation of state is WRIGHT_FULL now * Update tests such that LSM and LANDICE are set appropriately (ufs-community#2772) * UFSWM - Update default_vars and tests so that LSM 1/2 sets LANDICE true/false appropriately. * Replace icplocn2atm (integer) with use_oceanuv (logical); Update cloud build env to remove gnu from stack (was ufs-community#2842) (ufs-community#2867) * UFSWM - update ufs_noaacloud.intel.lua module file * UFSWM - replace icplocn2atm with use_oceanuv in scripts and tests * CMEPS - update CCPP metadata and type defs for use_oceanuv * FV3 - * ccpp-physics - replace instances of icplocn2atm with use_oceanuv * atmos_cubed_sphere - replace instances of icplocn2atm with use_oceanuv * NOAHMP - replace icplocn2atm with use_oceanuv * Send surface ocean currents to ATM for SFS test (ufs-community#2689) * UFSWM - add cplocn2atm to global_control.nml; set true for global SFS test * CMEPS - add export of ocean surface currents to ATM * Update default_vars for stochastic physics settings for global-worfklow. Minor document updates to reflect new HSD container (was ufs-community#2885). PR template update (was ufs-community#2891) (ufs-community#2889) * UFSWM - Update default_vars for stochastic physics for global-workflow * UFSWM - Update WM PR template * UFSWM - Updating HSD docs * Automatically add new PRs to WM PR Project board (ufs-community#2897) * UFSWM - Automate addition of PRs to project board * Resolve GitHub Project Board Authentication Problem (ufs-community#2908) * UFSWM - Fix add-to-project authentication for GH project board * Glacier modifications in NoahMP to address GFSv17 biases (ufs-community#2886) Modify NoahMP glacier code and initialization to address forecast biases (ufs-community#2886) * UFSWM - point to updated UFSATM * FV3 - point to updated ccpp-physics * ccpp-physics - update noahmp glacier physics and init code * ZStd with Netcdf; Modified tests to compare netcdf parallel output of WW3. Bring in several bug fixes affecting netcdf field output. (ufs-community#2826) (ufs-community#2444) * UFSWM - Add ZStd library and enable netcdf support for it. * * WW3 - This branch of WW3 fixes several bugs in parallel netcdf output from WW3. The tests in ufs-weather-model are modified to test the WW3 netcdf output fields rather than WW3 binary output. * Add noahmp and UFSATM hashes // Add Spack CI ufs-community#2654 // PR Project Board Label Updates ufs-community#2902 (ufs-community#2913) * UFSWM - Fix Atmos%iau_offset bug, remove goto statements from noahmp, add spack ci, and add changes to PR proj board * UFSATM - Set Atmos%iau_offset to iau_offset in module_fcst_grid_comp * NOAHMP - Remove goto statements and remove leftover debug write statement --------- Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov> Co-authored-by: Alexander Richert <alexander.richert@noaa.gov> * Fix time-averaged radiation computation (ufs-community#2660) * UFSWM - Fix computation of time-averaged radiation quantities * FV3 - Fix computation of time-averaged radiation quantities * ccpp-physics - Fix computation of time-averaged radiation quantities * Feature/rte rrtmgp v1.8 (ufs-community#2823) * UFSWM - Host-side changes for rte-rrtmgp update. * FV3 - Atmosphere component changes for rte-rrtmgp update. * ccpp-physics - Update rte-rrtmgp hash to v1.8. Add single-precision to rte-rrtmgp CCPP interface. * Sync from NCAR/main + Thompson params (ufs-community#2882) * UFSWM - Sync from NCAR/main + Thompson params * FV3 - Sync from NCAR/main + Thompson params * ccpp-physics - Sync from NCAR/main + Thompson params * Update the AQM sub-component to brining missing commits from production/AQM.v7 and reverse the Rsnow value + allow hfreeze as a parameter for MOM_input ufs-community#2920 (ufs-community#2893) * UFSWM - Add a variable to set the hfreeze value for MOM6 input. * AQM - Bring in additional changes from production/AQM.v7 and reversed the Rsnow value * Update inline post for GFSv17 // Add FV3 route handle opt ufs-community#2939 // Fix fpe in MOM6 ufs-community#2927 (ufs-community#2932) * UFSWM - Update inline post, add route handle opt, fix MOM6 divide by zero * UFSATM - Update inline post read interface and upp hash. * upp - Change BRTMP into BRTEMP for GFS, GEFS, SFS * MOM6 - Fix divide by zero fpe in MOM_oda_incupd.F90 --------- Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov> * Update WW3 and resolve warnings // Cloud cover parameter change ufs-community#2940 // Turn off HYCOM tests ufs-community#2936 // Ursa CICD update ufs-community#2945 (ufs-community#2948) * UFSWM - update cloud cover parameters in ccpp-physics, update WW3, disable HYCOM RTs, add Ursa CI/CD suport * UFSATM - updates physics * ccpp-physics - change to use moorthi parameters in xu/randall for Thompson M * WW3 - Updates WW3 to current develop and addresses compiler warnings * noahmp no stcslcadj at0inc (ufs-community#2941) * UFSWM - No STC-SLC Adjustments on 0 soil DA increments in NOAHMP * UFSATM - * ccpp-physics - No STC-SLC Adjustments on 0 soil DA increments in NOAHMP * NOAHMP - No STC-SLC Adjustments on 0 soil DA increments * Add compiler flags for cmake -DFASTER build option // Add post_itag_gcafs file ufs-community#2957 // Automate Additional Fields in PR Board ufs-community#2949 (ufs-community#2942) * UFSWM - Add compiler flags for cmake -DFASTER build option * UFSWM - Add post_itag_gcafs for GCAFSv1 model to process grib2 output * UFSWM - Improve automation for WM PR Project Board * UFSATM - Add compiler flags for cmake -DFASTER build option * atmos_cubed_sphere - Add compiler flags for cmake -DFASTER build option --------- Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov> Co-authored-by: Kate Zhang <kate.zhang@noaa.gov> * correct diagnostic of the accumulated fields, averaged cloud cover and radiative fluxes, etc (ufs-community#2956) * UFSWM - change .gitmodules, commit the UFSATM change about correcting some acccululated fields * UFSATM - correct a typo, nto-> ntoz, revert the change made to the accumulated fields including to the average cloud covers and radiative fluxes * Address some compiler warnings in UFSATM and stochastic physics: round 1 // Broad WM Documentation Update (ufs-community#2928) (ufs-community#2935) * UFSWM - Address some compiler warnings for cpld_debug_gfsv17 & update documentation * UFSATM - Address some compiler warnings for cpld_debug_gfsv17 * ccpp-physics - Address some compiler warnings for cpld_debug_gfsv17 * atmos_cubed_sphere - Address some compiler warnings for cpld_debug_gfsv17 * stochastic_physics - Address some compiler warnings for cpld_debug_gfsv17 * UFSATM: Replace GFS_interstitial phys_reset and rad_reset routines with combined reset routine // removing variables from CICE NetCDF file (ufs-community#2951) (ufs-community#2880) * UFSWM - Update submodule pointer for UFSATM and ccpp-physics; remove vars from CICE netCDF file * FV3 - Replace GFS_interstitial phys_reset and rad_reset routines with combined reset routine * ccpp-physics - Update GFS_debug schemes: remove GFS_interstitialtoscreen_timestep_init and GFS_interstitialtoscreen_init --------- Co-authored-by: Neil Barton <neil.barton@noaa.gov> * Update SFS test to C192mx025; add debug and restart tests; update ultralow warmstart input to specify V2 file type // Address some compiler warnings in UFSATM and UPP: round 2 (ufs-community#2958) (ufs-community#2835) * UFSWM - Point RTs to new input-data directory with fixes for ultralow warmstart files and new SFS configuration * UFSWM - Update configuration of SFS test to C192mx025 and add a restart and debug test * UFSWM - Rename diag table template for SFS to diag_table_sfs.IN * UFSWM - Add namelist parameters to control use of ECMWF non-stationary gravity wave scheme, tte_edmf and cscale * UFSWM - Add namelist parameter to set new_lscale for stochastic physics * UFSWM - Use UPP modules in UFSATM for explicit interfaces in post * UFSATM - Add 'file_version' global attribute to sfc_data restart files, as defined in input sfc_data files * UFSATM - Use UPP modules in UFSATM for explicit interfaces in post; update UPP hash * stochastic_physics - Restrict print messages to be on root PE only * UWM changes for CCPP framework update // Miscellaneous updates (ufs-community#2974) (ufs-community#2881) * UFSWM - Changes to accommodate CCPP Framework updates. * UFSWM - Update Orion/Hercules DISKNM locations * CMEPS - Changes to accommodate CCPP Framework updates. * UFSATM - Changes to accommodate CCPP Framework updates. * ccpp-physics - Changes to accommodate CCPP Framework updates. * UFSATM: Convert frestart from statically do dynamically allocated array // PR for Log Warnings ufs-community#2924 // Chore/fix reposync and status checks ufs-community#2873 (ufs-community#2954) * UFSWM - UFSATM: Convert frestart from statically do dynamically allocated array * UFSWM - Create scorecard for runtime/memory metrics by machine * UFSWM - Fixing repo sync check and conditional block logic. * UFSATM - Convert frestart from statically do dynamically allocated array * Bring in the Gaussian plume rise algorithm of fire emissions for the AQM component (ufs-community#2960) * UFSWM - * AQM - bring in the Gaussian plume rise algorithm of fire emissions * address unreasonable large F0 and F1 in entrainment calculation (ufs-community#2971) * UFSWM - address unreasonable large F0 and F1 in entrainment calculation - 2971 * UFSATM - address unreasonable large F0 and F1 in entrainment calculation - 1033 * ccpp-physics - address unreasonable large F0 and F1 in entrainment calculation - 327 * Remove local copies of FindESMF.cmake from all components // Fix labeling issues with ORT testing ufs-community#2982 // Update CICE (2025-11) ufs-community#2989 (ufs-community#2406) * UFSWM - Remove local copies of FindESMF.cmake from all components * UFSWM - Fix labeling issues with ORT testing; update Jenkins to use Slack notifications plugin * UFSWM - Update CICE (2025-11) * CICE - Update CICE (2025-11) * AQM - Remove local copy of FindESMF.cmake * FV3 - Remove local copy of FindESMF.cmake * atmos_cubed_sphere - Remove local copy of FindESMF.cmake * WW3 - Remove local copy of FindESMF.cmake * LM4 - Remove local copy of FindESMF.cmake * Add -check all and -ftrapuv to all Intel DEBUG builds (ufs-community#2789) * UFSWM - Add -check all and -ftrapuv to all Intel DEBUG builds * FV3 - Add -check all and -ftrapuv to all Intel DEBUG builds * atmos_cubed_sphere - Add -check all and -ftrapuv to all Intel DEBUG builds * stochastic_physics -Add -check all and -ftrapuv to all Intel DEBUG builds * Use method_blsn option in visibility calculation (ufs-community#2987) * UFSWM - change tests/parm/post_itag_gfs to use method_blsn option, add UFSATM and update .gitmodules * UFSATM - add method_blsn to the namelist * diag_table clean up ; Disable concurrent builds with the same PR label (was ufs-community#3006); fix time-averaged radiation (was ufs-community#2996) (ufs-community#3004) * UFSWM - cleanup diag_tables, retaining current baselines * UFSWM - Disable concurrent Jenkins CI/CD builds * UFSATM - Fix calculation of averaged radiation fields * Add exclusive SLURM option to select RTs on Ursa // fix per-timestep restarts for ATM ufs-community#2992 // Fix compilation warnings and update WW3 ufs-community#3000 (ufs-community#2979) * UFSWM - Add exclusive node option * UFSWM - updates WW3 and resolves compiler warnings * UFSATM - fix per-timestep restarts * WW3 - Addresses compiler warnings and updates WW3 to current develop branch * Add logging capability to MOM6 cap (ufs-community#2964) * UFSWM - add MOM6 configuration variables to attributes in ufs.configure * UFSWM - use same time-string format for all MOM6 diag fields in diag_tables * UFSWM - update CDEPS share code for optional arguments * MOM6 - add output logging module to MOM6 NUOPC cap * Update submodule pointer for UFSATM (CCPP metadata updates) // Remove faster tests (ufs-community#3003) (ufs-community#2983) * UFSWM - remove compile jobs and tests associated w/ "faster" * UFSWM - Update submodule pointer for UFSATM (CCPP metadata updates, point to head of ccpp-framework develop) * UFSATM - CCPP metadata-only changes; ccpp-framework update to head of "develop" branch * ccpp-physics - CCPP metadata: relative_path --> dependencies_path * ccpp-framework - CCPP metadata: relative_path --> dependencies_path & point to head of develop * CMEPS: CCPP metadata: relative_path --> dependencies_path * NCAR/main ccpp-physics sync (ufs-community#2998) * UFSWM - NCAR/main ccpp-physics sync * UFSATM - NCAR/main ccpp-physics sync * ccpp-physics - NCAR/main ccpp-physics sync * Skeb hydro2 (ufs-community#2997) * UFSWM - update submodule pointer * FV3 - update submodule pointer * atmos_cubed_sphere - zero out temporary arrays so SKEB will work when no vorticity damping * complete diag_table cleanup for coupled tests (ufs-community#3016) * UFSWM - Replace diag_table_template and replace with diag_table_cpld for cpld tests * update CMEPS w/ latest ESCOMP/main; add branch-type startup (was ufs-community#3029); Allow ihr to be non-mulitples of 6 in ccpp-physics (was ufs-community#3036) (ufs-community#3030) * UFSWM - Set IsRestart true only for continue run types; allow ihr to be non-multiples of 6 * CMEPS - update CMEPS w/ ESCOMP/main * UFSATM - Allow ihr to be non-multiples of 6 * ccpp-physics - Allow ihr to be non-multiples of 6 * Derecho updates: new spack-stack-1.9.2, rocoto, ecflow paths, TPN=128 default + Fix UFSATM CI github action ufs-community#3035 (ufs-community#2863) * Derecho update of rocoto and ecflow paths * Derecho rt_utils.sh: wait longer to query completed job status * use new Derecho spack-stack 1.9.2 environment built with ncarenv/24.12 * updates of modulefile and compile_qsub for derecho * update a script fv3_qsub.IN_derecho * updates for derecho RTs * tests configurations updated for derecho * updated module-setup.sh for Derecho and ufs_derecho.intel.lua modulefile * turn off derecho failed cases * Fix for derecho: use nccmp/1.9.0.1 module from spack-stack * Fix for modulefiles/ufs_derecho.gnu.lua: add env. compiler variables * Enable GNU tests on Derecho * combine in pr3035 ufsatm ci fix * Remove goto statements in WW3 subcomponent (ufs-community#3040) * UFSWM - Remove goto statements * WW3 - Remove goto statements in wav_shel_in.F90 * Change MOM6_OUTPUT_FH variable name to MOM6_HISTFREQ_N + Update MOM6 with inline-CDEPS capability ufs-community#3033 (ufs-community#3044) * UFSWM - Change MOM6_OUTPUT_FH name to add consistency * MOM6 - enable CDEPS inline * update CMEPS to map SLP->ocean bilinearly (ufs-community#3031) * UFSWM - Set coupling mode to ufs.frac.aoflux for datm tests * CMEPS - change mapping for Sa_pslv->OCN from conservative fraction to bilinear * Bring CDEPS Inline capability to FV3 (ufs-community#2807) * UFSWM - update for CDEPS inline capability * CMEPS - bring updates from CCPP GFS surface composite * UFSATM - update for CDEPS inline capability * ccpp-physics - bring CDEPS inline capability * Add tracing instrumentation (ufs-community#2884) * UFSWM - Add tracing instrumentation * CICE - Add tracing instrumentation * CMEPS - Add tracing instrumentation * FV3 - Add tracing instrumentation * MOM6 - Add tracing instrumentation * WW3 - Add tracing instrumentation * Enable optional mapfiles in CMEPS (ufs-community#3032) * CMEPS - enable CMEPS to use pre-generated mapfiles, if filenames are provided via config * Fix Issue ufs-community#2119 - shrink regional domain slightly (ufs-community#3047) * UFSWM - shrink domain slightly for regional tests; activate gnv1_nested_intel on wcoss2/hercules * update MOM6 to its main repo. 20260112 updating (ufs-community#3051) * UFSWM - update MOM6 to its main repository 20260112 updating (originally GFDL's 20250925 PR) * MOM6 - update MOM6 to its main repository 20260112 updating (originally GFDL's 20250925 PR) * Start to remove stale RTs // Add GUST_CONST as a variable ufs-community#3056 // PR-Arbetter-JenkinsfileORT ufs-community#3066 (ufs-community#3065) * UFSWM - Remove flake and other stale regression tests * UFSWM - Use non-default value of MOM6 GUST_CONST variable in SFS * UFSWM - update Jenkinsfile.ort and OpnReqTests to run on ursa & other platforms * sync components * sync WW3 * Modified 'dtfac' OGWD tendency limiter in drag_suite_psl to match that in drag_suite_run (ufs-community#3064) * UFSWM - modify 'dtfac' OGWD tendency limiter in drag_suite_psl to match that in drag_suite_run. * UFSATM - modify 'dtfac' OGWD tendency limiter in drag_suite_psl to match that in drag_suite_run. * ccpp-physics - modify 'dtfac' OGWD tendency limiter in drag_suite_psl to match that in drag_suite_run. * fix issues * Update UPP (2026-01) // Update UFSATM to include ccpp-physics sfcsub cleanup (ufs-community#3076) // Remove compiler remarks in WW3 subcomponent from debug build (ufs-community#3081) (ufs-community#3072) * UFSWM - Update UPP, including EE2 fixes; update CCPP * UFSWM - Remove compiler remarks in debug build * UFSATM - Update UPP to top of develop, including EE2 fixes for SWRF, SDEN to reproduce when threading * UFSATM - Update CCPP hash for PR 343 * CCPP - cleanup sfcsub routine * WW3 - Silence compiler remarks in debug build * Bring in some HAFSv2 related developments and updates (ufs-community#3014) * UFSWM - Merge some HAFSv2 related developments (e.g., relevant RRTMGP, Thompson MP, SASAS CP, NoahMP LSM, 3DIAU changes and updates) back to ufs-weather-model. * UFSATM - HAFSv2 and moving-nesting related RRTMGP, Thompson MP, SASAS CP, NoahMP LSM, 3DIAU changes and updates. * ccpp-physics - Introduce Thompson MP namelist options to adjust rain and snow max terminal fall speeds; Enable RRTMGP working with nesting; Introduce SASAS namelist options to control convective adjustment time. * atmos_cubed_sphere - Add 3DIAU capability for regional HAFS moving nest. * Add cpld_control_c1152 operational config tests for weekly RTs (ufs-community#2749) * UFSWM - Create c1152 regression test suite * Feature/mynn sfc submodule (ufs-community#3052) // Update WM user guide for AQM updates (ufs-community#3071) // Sync WW3 develop to dev/ufs-weather-model (ufs-community#3091) (ufs-community#3052) * UFSWM - Switch mynn sfc scheme to submodule * UFSWM - Update WM user guide ahead of the AQM release; fix doc ci fail * UFSWM - Sync WW3 develop to dev/ufs-weather-model * UFSATM - Updates in suite definitions files and ccpp preconfig file to work with mynn sfc scheme submodule * ccpp-physics - switch mynn sfc scheme to submodule * WW3 - Sync develop as of 2-12-2026 to dev/ufs-weather-model * Fix premature finalizes and retrieval of is_moving info in ATM cap (ufs-community#3093) // Aquaplanet test case (ufs-community#3013) (ufs-community#3093) * UFSWM - added aquaplanet test under ufs-weather-model/tests-dev/ directory * UFSATM - add a barrier in the UFS ATM cap and reorder the retrieval of the is_moving info when intitializing the WCG * Switch interpolation from bilinear to nearest neighbor for u10mmax, v10mmax, and wind10mmax for consistency (ufs-community#3088) // HSD Aquaplanet Documentation ufs-community#3096 (ufs-community#3088) * UFSWM - Switch interpolation from bilinear to nearest neighbor for u10mmax, v10mmax, and wind10mmax for consistency * UFSWM - Update documentation w/aquaplanet case * UFSATM - Switch interpolation from bilinear to nearest neighbor for u10mmax, v10mmax, and wind10mmax for consistency * Fix data path in HSD docs (ufs-community#3106) * UFSWM - fix HSD data download path * Explicit Subcanopy Effect in UFSATM/ccpp-physics PBL-SATMEDMF Scheme (ufs-community#3060) * UFSWM - Update for Explicit Subcanopy Effects on Chemical Tracers in the UFSATM/ccpp-physics PBL-SATMEDMF Scheme * AQM - Canopy code bug fixes to allow compile and run the RT test in debug mode * UFSATM - Physics (PBL-SATMEDF) Update for Explicit Subcanopy Effects on Chemical Tracers * ccpp-physics - Update for Explicit Subcanopy Effects on Chemical Tracers in the PBL-SATMEDMF Scheme * sync components * minor fix in cmake interface * sync SCHISM and nuopc cap * clean test config file * sync SCHISM * update GeoGate * update CICE * update schism and bring hot restart fix * update CICE * update CICE and SCHISM * update schism * fix intel issue for wcoss * minor fix for ROMS build * add new option for sea-ice coupling * update CDEPS * update component * update CDEPS * fix adcirc and fvcom cmake interfaces * minor fix in defaults for MPAS dycore * point master for the model * update schism --------- Co-authored-by: Denise Worthen <denise.worthen@noaa.gov> Co-authored-by: Barry Baker <bbakernoaa@users.noreply.github.com> Co-authored-by: Ted Mansell (NOAA/NSSL) <37668594+MicroTed@users.noreply.github.com> Co-authored-by: Larissa Reames <larissa.reames@noaa.gov> Co-authored-by: Jong Kim <jong.kim@noaa.gov> Co-authored-by: Kris Booker <kristopher.booker@tomorrow.io> Co-authored-by: jiandewang <jiande.wang@noaa.gov> Co-authored-by: FernandoAndrade-NOAA <Fernando.Andrade-maldonado@noaa.gov> Co-authored-by: BinLi-NOAA <bin.li@noaa.gov> Co-authored-by: Natalie Perlin <Natalie.Perlin@noaa.gov> Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com> Co-authored-by: DavidHuber-NOAA <david.huber@noaa.gov> Co-authored-by: Daniel Sarmiento <42810219+dpsarmie@users.noreply.github.com> Co-authored-by: Nicholas Szapiro <149816583+NickSzapiro-NOAA@users.noreply.github.com> Co-authored-by: Jessica Meixner <Jessica.Meixner@noaa.gov> Co-authored-by: mingchen-NOAA <ming.chen1@noaa.gov> Co-authored-by: Dustin Swales <dustin.swales@noaa.gov> Co-authored-by: epic-cicd-jenkins <ecc.platform@noaa.gov> Co-authored-by: Fernando Andrade - NOAA <121964418+FernandoAndrade-NOAA@users.noreply.github.com> Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov> Co-authored-by: Wei Huang <wei.huang@noaa.gov> Co-authored-by: Bin Liu <bin.liu@noaa.gov> Co-authored-by: lisa-bengtsson <54411948+lisa-bengtsson@users.noreply.github.com> Co-authored-by: Brian Curtis <64433609+BrianCurtis-NOAA@users.noreply.github.com> Co-authored-by: Gillian Petro <96886803+gspetro-NOAA@users.noreply.github.com> Co-authored-by: Michael Barlage <michael.barlage@noaa.gov> Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov> Co-authored-by: Alexander Richert <alexander.richert@noaa.gov> Co-authored-by: Grant Firl <grant.firl@noaa.gov> Co-authored-by: KaiWang-NOAA <109170734+KaiWang-NOAA@users.noreply.github.com> Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com> Co-authored-by: Tseganeh Z. Gichamo <zacctsega@yahoo.com> Co-authored-by: Kate Zhang <kate.zhang@noaa.gov> Co-authored-by: RuiyuSun <42656044+RuiyuSun@users.noreply.github.com> Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com> Co-authored-by: Neil Barton <neil.barton@noaa.gov> Co-authored-by: AnningCheng-NOAA <48297505+AnningCheng-NOAA@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: Natalie Perlin <68030316+natalie-perlin@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: Xia Sun <58949533+XiaSun-Atmos@users.noreply.github.com> Co-authored-by: Patrick Campbell <dr.nimbusrain@gmail.com>

AnningCheng-NOAA and others added 3 commits November 4, 2025 03:05

establish entr_f0f1

d269d7d

submodule points to entr_f0f1

3d26809

regression tests done

d320494

github-project-automation Bot added this to PRs to Process Nov 5, 2025

github-project-automation Bot moved this to Evaluating in PRs to Process Nov 5, 2025

AnningCheng-NOAA added 4 commits November 6, 2025 17:34

fully regressions tests done in ursa

72cbf23

sync with the trunk

8435d6c

merge to the develop branch in ufs-weather-model

3f84a6c

add tests/error-test.conf

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gspetro-NOAA added No Baseline Change No Baseline Change Priority: High UFSATM There are changes to the UFSATM repository. UPP There are changes to the UPP component repository. SP There are changes to the stochastic_physics component repository. labels Nov 7, 2025

changes in ecmwf_ngw.F90

a973ff6

AnningCheng-NOAA and others added 2 commits November 11, 2025 02:34

merge to the develop branch in ufs-weather-model

48533af

update stochastic physics hash

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gspetro-NOAA removed the SP There are changes to the stochastic_physics component repository. label Nov 12, 2025

gspetro-NOAA moved this from Evaluating to Pre-testing required in PRs to Process Nov 13, 2025

FernandoAndrade-NOAA mentioned this pull request Nov 20, 2025

address unreasonable large F0 and F1 in entrainment calculation ufs-community/ccpp-physics#327

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revert .gtmodule

ddbe4d0

update UFSATM

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jkbk2004 mentioned this pull request Nov 21, 2025

sync up physics hash NOAA-EMC/ufsatm#1040

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update ufsatm hash

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Update test_changes.list fix typo

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FernandoAndrade-NOAA dismissed stale reviews from gspetro-NOAA and jkbk2004 via 1abdcad November 24, 2025 18:11

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gspetro-NOAA merged commit 8705244 into ufs-community:develop Nov 24, 2025
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gspetro-NOAA removed the In Testing The PR that is currently in testing stages label Nov 24, 2025

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