Unify CDEPS gfs, cfsr, and gefs datm datamodes + Improve error checking in rt.sh (2388) + Add ability to read increment files on native cubed sphere grid (2304)

[NickSzapiro-NOAA]

Commit Queue Requirements:

• Fill out all sections of this template.
• All sub component pull requests have been reviewed by their code managers.
• Run the full Intel+GNU RT suite (compared to current baselines) on either Hera/Derecho/Hercules
• Commit 'test_changes.list' from previous step

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Description:

Code for gfs, cfsr, and gefs datm datamodes is very similar (just with different function names). This PR removes the duplicates. As gefs datm datamode is already in ESCOMP/CDEPS, gefs is retained here. Note that GFS, GEFS, CFSR, etc. input datasets are still handled via streams in the same way, just with datamode == 'GEFS'. Sunset gfs_hafs datamode no longer used.

These PRs have also been merged for commit queue (via PR to this branch on their behalf):

• Add ability to read increment files on native cubed sphere grid #2304
• Improve error checking in rt.sh #2388

Commit Message:

* UFSWM -  Unify CDEPS gfs, cfsr, and gefs datm datamodes. Add ability to read increment files on native cubed sphere grid.  Update rt scripts to fix checking the job exit status from Slurm and PBS schedulers.
  * FV3 - Add namelist parameter for cubed sphere increment read and update atmos_cubed_sphere hash for GFDL Atmospheric Cubed Sphere PR #[342](https://github.com/NOAA-GFDL/GFDL_atmos_cubed_sphere/pull/342)
    * atmos_cubed_sphere - Add ability to read increments from files on native cubed sphere grid
  * CDEPS - Unify CDEPS gfs, cfsr, and gefs datm datamodes. Rename CDEPS-related FILENAME_BASE to FILEBASE_DATM in tests. Sunset gfs_hafs datamode.

Priority:

• Normal

Git Tracking

UFSWM:

• Closes Synchronize DATM in EMC/CDEPS with authoritative ESCOMP/CDEPS NOAA-EMC/CDEPS#64

Sub component Pull Requests:

• CDEPS: Unify gfs, cfsr, and gefs datm datamodes NOAA-EMC/CDEPS#63
• FV3: Add ability to read increment files on native cubed sphere grid NOAA-EMC/ufsatm#837
  • atmos_cubed_sphere: Add ability to read increment files on native cubed sphere grid NOAA-GFDL/GFDL_atmos_cubed_sphere#342

UFSWM Blocking Dependencies:

• None

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Changes

Regression Test Changes (Please commit test_changes.list):

• No Baseline Changes.

Input data Changes:

• None.

Library Changes/Upgrades:

• No Updates

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Testing Log:

• RDHPCS
  • Hera
  • Orion
  • Hercules
  • Jet
  • Gaea
  • Derecho
• WCOSS2
  • Dogwood/Cactus
  • Acorn
• CI
• opnReqTest (complete task if unnecessary)

[zach1221]

Testing is complete. We can start the merging process with cubed-sphere #342

[zach1221]

@NickSzapiro-NOAA Please update .gitmodule urls and hashes.

NOAA-EMC/CDEPS@1f9eaaa
NOAA-EMC/ufsatm@70b3065