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Merged
DeniseWorthen merged 27 commits into from
Feb 27, 2020
Merged

Update NEMS,FV3,CICE #28

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ae4051d
Merge pull request #1 from ufs-community/develop
DeniseWorthen Nov 20, 2019
6c0ea1d
Update .gitmodules
DeniseWorthen Nov 22, 2019
e72146c
update submodules for nems,stochastic_physics
DeniseWorthen Nov 22, 2019
190d88f
update NEMS,stochastic_physics
DeniseWorthen Nov 23, 2019
b9c578e
Merge pull request #2 from ufs-community/develop
DeniseWorthen Nov 27, 2019
0c8cb0b
update CICE submode for feature/halfdeg (with build change) and
DeniseWorthen Dec 2, 2019
fd535ff
Merge pull request #3 from ufs-community/develop
DeniseWorthen Dec 6, 2019
040d027
Revert "update CICE submode for feature/halfdeg (with build change) and"
DeniseWorthen Dec 6, 2019
6d15ca7
update CICE submodule
DeniseWorthen Dec 6, 2019
7bf2632
update develop branch in my fork to use NOAA-EMC develop branches
DeniseWorthen Dec 12, 2019
9d2b7a3
Merge pull request #5 from ufs-community/develop
DeniseWorthen Jan 1, 2020
d391b7c
Merge pull request #6 from ufs-community/develop
DeniseWorthen Jan 16, 2020
bf4bbce
Update configure.fv3_coupled.hera.intel
DeniseWorthen Jan 20, 2020
7809696
Update configure.fv3_coupled.cheyenne.intel
DeniseWorthen Jan 20, 2020
6a9bf46
Merge pull request #7 from ufs-community/develop
DeniseWorthen Jan 21, 2020
f94e746
Merge pull request #8 from ufs-community/develop
DeniseWorthen Jan 24, 2020
57236a6
update gitmodules, FV3 for gfsv16 incomming commit, NEMS for
DeniseWorthen Jan 24, 2020
2ac97e1
Revert changes that were meant for a branch, not develop
DeniseWorthen Jan 24, 2020
06506f2
Merge pull request #9 from ufs-community/develop
DeniseWorthen Jan 28, 2020
56e42ca
Merge pull request #13 from ufs-community/develop
DeniseWorthen Feb 1, 2020
fb154e5
Merge pull request #15 from ufs-community/develop
DeniseWorthen Feb 24, 2020
00310a5
update FV3 to develop; CICE_SRC and NEMS for changefldnames
DeniseWorthen Feb 25, 2020
1e77cde
hera.input points to updated baseline area
DeniseWorthen Feb 25, 2020
9e8bf4a
update CICE submodule
DeniseWorthen Feb 25, 2020
c1d1c3d
updates NEMS submodule to include dual-build; add logs
DeniseWorthen Feb 26, 2020
c0bec99
update gitmodules for NEMS, add logs and fingerprint
DeniseWorthen Feb 27, 2020
e179e33
Update hera.input
DeniseWorthen Feb 27, 2020
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2 changes: 1 addition & 1 deletion CICE_SRC
Open in desktop
Submodule CICE_SRC updated 2 files
+0 −2 lanl_cice/bld/Macros.Linux.NEMS.cheyenne
+12 −12 lanl_cice_cap/cice_cap.F90
2 changes: 1 addition & 1 deletion FV3
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Submodule FV3 updated from 7ffe64 to 8683a6
2 changes: 1 addition & 1 deletion NEMS
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Submodule NEMS updated 7 files
+166 −0 LICENSE.md
+4 −0 src/GNUmakefile
+7 −0 src/incmake/component_CICE.mk
+47 −0 src/incmake/component_CMEPS.mk
+7 −0 src/incmake/component_MOM6.mk
+451 −8 src/module_EARTH_GRID_COMP.F90
+199 −144 src/module_MEDIATOR.F90
4 changes: 2 additions & 2 deletions compsets/hera.input
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Original file line number Diff line number Diff line change
Expand Up @@ -26,8 +26,8 @@ platform hera.intel {
# INPUTS is the input directory, which should contain fix and parm
# files, plus any restarts or other inputs.

BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200228"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200228"
INPUTS="@[BASELINE]"

default_resources={
Expand Down
2,370 changes: 2,236 additions & 134 deletions log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
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Large diffs are not rendered by default.

114 changes: 58 additions & 56 deletions log/report-hera.intel-log/rtreport.txt
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Original file line number Diff line number Diff line change
@@ -1,34 +1,36 @@
Run rocotostat...
Generate report...
WORKFLOW STARTED AT Wed Feb 19 15:06:49 2020 (+1582124809)
WORKFLOW STARTED AT Thu Feb 27 15:42:54 2020 (+1582818174)
Repository information:


REPO TOP:
develop a05d12a [origin/develop] Merge remote-tracking branch 'upstream/develop' into develop
Fetch URL: https://github.com/binli2337/ufs-s2s-model
M compsets/datesuite_warm.input
develop fb154e5 [origin/develop] Merge pull request #15 from ufs-community/develop
Fetch URL: https://github.com/DeniseWorthen/ufs-s2s-model.git
M .gitmodules
M NEMS
M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
M log/report-hera.intel-log/rtreport.txt
M parm/REGTEST-FINGERPRINT.md

Entering 'CICE_SRC'
(HEAD detached at aafac32) aafac32 Code changes to support automatic debug compilation (#10)
(HEAD detached at 27e5e3f) 27e5e3f Change field names (#13)
Fetch URL: https://github.com/NOAA-EMC/CICE5.git

Entering 'FMS'
(HEAD detached at 46014b4) 46014b4 Merge pull request #8 from DusanJovic-NOAA/GFS-FMS
Fetch URL: https://github.com/NOAA-EMC/FMS

Entering 'FV3'
(HEAD detached at 7ffe647) 7ffe647 GFSv16 netcdf post ficein cpl (#48)
(HEAD detached at 8683a69) 8683a69 Iaudrymass coupledfield ww3 (#61)
Fetch URL: https://github.com/NOAA-EMC/fv3atm

Entering 'MOM6'
(HEAD detached at 1fd3493) 1fd3493 Merge pull request #9 from jiandewang/update-MOM6-20200108
Fetch URL: https://github.com/NOAA-EMC/MOM6-interface

Entering 'NEMS'
(HEAD detached at 044400a) 044400a remove ice-ocean merge in prep_atm (#24)
develop c19bb03 [origin/develop] Feature/changefldnames (#29)
Fetch URL: https://github.com/NOAA-EMC/NEMS.git

Entering 'stochastic_physics'
Expand All @@ -39,8 +41,8 @@ Fetch URL: https://github.com/noaa-psd/stochastic_physics
BUILD fv3_mom6_cice.exe: SUCCEEDED

TEST #1: PASS
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Wed Feb 19 15:08:39 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Wed Feb 19 15:08:39 UTC 2020
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Thu Feb 27 16:08:20 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Feb 27 16:08:20 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -113,14 +115,14 @@ TEST #1: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:53:23 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:53:11 UTC 2020

TEST #2: PASS
Test cpld_fv3_mom6_cice_2d_decomp starting at Wed Feb 19 15:08:40 UTC 2020 (Fully coupled FV3-MOM6-CICE system - decomp)
Wed Feb 19 15:08:40 UTC 2020
Test cpld_fv3_mom6_cice_2d_decomp starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - decomp)
Thu Feb 27 16:08:21 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -193,14 +195,14 @@ TEST #2: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:35:06 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:34:47 UTC 2020

TEST #3: PASS
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Wed Feb 19 15:08:59 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Wed Feb 19 15:08:59 UTC 2020
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Thu Feb 27 16:08:24 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Feb 27 16:08:24 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -273,14 +275,14 @@ TEST #3: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:35:23 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:35:19 UTC 2020

TEST #4: PASS
Test cpld_fv3_mom6_cice_2d_2threads starting at Wed Feb 19 15:11:42 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2 threads)
Wed Feb 19 15:11:42 UTC 2020
Test cpld_fv3_mom6_cice_2d_2threads starting at Thu Feb 27 16:08:42 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2 threads)
Thu Feb 27 16:08:42 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -353,14 +355,14 @@ TEST #4: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:38:45 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:35:52 UTC 2020

TEST #5: PASS
Test cpld_fv3_mom6_cice_1d_satmedmf starting at Wed Feb 19 15:10:04 UTC 2020 (Fully coupled FV3-MOM6-CICE system - satmedmf)
Wed Feb 19 15:10:04 UTC 2020
Test cpld_fv3_mom6_cice_1d_satmedmf starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - satmedmf)
Thu Feb 27 16:08:21 UTC 2020
phyf024.tile1.nc: bit-for-bit identical
phyf024.tile2.nc: bit-for-bit identical
phyf024.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -433,14 +435,14 @@ TEST #5: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:25:19 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:23:36 UTC 2020

TEST #6: PASS
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Wed Feb 19 15:10:04 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Wed Feb 19 15:10:04 UTC 2020
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Thu Feb 27 16:08:21 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -496,14 +498,14 @@ TEST #6: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:15:18 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:13:20 UTC 2020

TEST #7: PASS
Test cpld_fv3_mom6_cice_cold_satmedmf starting at Wed Feb 19 15:11:33 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold_satmedmf)
Wed Feb 19 15:11:33 UTC 2020
Test cpld_fv3_mom6_cice_cold_satmedmf starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold_satmedmf)
Thu Feb 27 16:08:21 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -559,14 +561,14 @@ TEST #7: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:14:12 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:10:52 UTC 2020

TEST #8: PASS
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Wed Feb 19 15:11:33 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Wed Feb 19 15:11:33 UTC 2020
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Thu Feb 27 16:08:30 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Thu Feb 27 16:08:30 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -622,11 +624,11 @@ TEST #8: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:14:12 UTC 2020
WORKFLOW REPORT AT Wed Feb 19 15:54:21 2020 (+1582127661)
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:10:56 UTC 2020
WORKFLOW REPORT AT Thu Feb 27 16:53:33 2020 (+1582822413)
Tests: 0 failed, 8 passed out of 8
Builds: 0 failed, 1 passed out of 1
REGRESSION TEST WAS SUCCESSFUL
2 changes: 2 additions & 0 deletions parm/REGTEST-FINGERPRINT.md
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Original file line number Diff line number Diff line change
Expand Up @@ -86,3 +86,5 @@ Change log:
Input templates were removed and fix file directories were cleaned up
* Jan. 28, 2020 FV3 ensures imported ice_fraction is in range (0-1), merges between
ice and ocean in prep_atm phase of mediator are removed
* Feb. 27, 2020 Field name changes for CICE SW, removal of custom merges in prep_atm, removal
of mediator fluxes for icy water in prep_ocn