Scripts for file processing and analysis in phylogenetics and phylogeography
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Updated
Jan 6, 2021 - Shell
Scripts for file processing and analysis in phylogenetics and phylogeography
Automated imputation pipeline for arbitrary dataset and reference panels.
Mapping, snps calling, phylogeny
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
A program for pulling flanking sequences from a reference genome for a SNP
Find shared SNPs between different microarray chips
Pipelines to identify polymorphic genetic and methylation variants
Pipeline to assemble paired-end sequencing reads, annotate the resulting contigs, compare the genome content across sequences and determine the variants (SNPs).
Estimate age of single-nucleotide polymorphisms from genomes
Building a fully automized pipeline for population genomic and conservation genomic analyses.
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