Skip to content

Issues: theislab/scgen

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 57 Closed
23 Open 57 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

idea/question (estimating gene mutation)
#100 opened Oct 7, 2024 by muntajihad
Tutorial example not working
#99 opened Sep 15, 2024 by thebeancounter
Is it possible to keep the original distribution in the output space?
#98 opened Aug 31, 2024 by HelloWorldLTY
dependencies update required
#97 opened Aug 1, 2024 by janursa
2
Restarting model training from a saved checkpoint.
#96 opened Jul 18, 2024 by ediriwas
Results are not consist with [tutorials/scgen_perturbation_prediction.ipynb]
#95 opened Jul 8, 2024 by liaowenyu
get_marginal_ll not implemented for perturbation example model
#93 opened Jun 6, 2024 by ajaynadig
TypeError: Can't instantiate abstract class SCGEN with abstract methods setup_anndata
#91 opened Nov 20, 2023 by GGboy-Zzz
1
difference between SCGEN and SCGENVAE
#89 opened Oct 8, 2023 by huawen-poppy
scgen Literal deprecation error
#88 opened Oct 5, 2023 by abuchin
1
Question about get_decoded_expression() and predict() functions
#85 opened Aug 14, 2023 by znavidi
Error in network.batch_removal() due to missing positional argument in AnnData.concatenate()
#83 opened Jul 7, 2023 by macelik
5
Update depreciated AnnData.concatenate
#82 opened Jun 21, 2023 by quentinblampey
2
Accurate requirements to setup the environment on Windows
#81 opened May 11, 2023 by pbilinskyi
How to reproduce paper results
#80 opened May 6, 2023 by SZ-qing
5
How to use data with categories unseen by a trained model
#74 opened Oct 7, 2022 by majpark21
1
Unequal size of perturbated size
#72 opened Sep 12, 2022 by XinyeZhao
Inconsistent batch removal when loading saved scGEN model
#71 opened Jun 19, 2022 by TemiLeke
Errors while reading salmonella h5ad files
#70 opened May 7, 2022 by bitcometz
1
labels_key mismatch in scgen.SCGEN.setup_anndata()
#69 opened May 6, 2022 by johnjeang
Questions about drug perturbation prediction using cell line data
#68 opened Apr 27, 2022 by GA-1101
Questions about building predictive models
#67 opened Apr 26, 2022 by GA-1101
Questions on batch removal tutorial
#58 opened Nov 16, 2021 by Pazuzzilla
2
ProTip! Adding no:label will show everything without a label.