install code for tutorials

theislab · Apr 25, 2022 · 518b595 · 518b595
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diff --git a/docs/tutorials/scgen_batch_removal.ipynb b/docs/tutorials/scgen_batch_removal.ipynb
@@ -77,7 +77,7 @@
       "source": [
         "import sys\n",
         "#if branch is stable, will install via pypi, else will install from source\n",
-        "branch = \"master\"\n",
+        "branch = \"stable\"\n",
         "IN_COLAB = \"google.colab\" in sys.modules\n",
         "\n",
         "if IN_COLAB and branch == \"stable\":\n",

diff --git a/docs/tutorials/scgen_perturbation_prediction.ipynb b/docs/tutorials/scgen_perturbation_prediction.ipynb
@@ -15,14 +15,14 @@
    "source": [
     "import sys\n",
     "#if branch is stable, will install via pypi, else will install from source\n",
-    "branch = \"pytorch\"\n",
+    "branch = \"stable\"\n",
     "IN_COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "if IN_COLAB and branch == \"stable\":\n",
-    "    !pip install --quiet scvi-tools[tutorials]\n",
+    "    !pip install --quiet scgen[tutorials]\n",
     "elif IN_COLAB and branch != \"stable\":\n",
     "    !pip install --quiet --upgrade jsonschema\n",
-    "    !pip install --quiet git+https://github.com/yoseflab/scvi-tools@$branch#egg=scgen[tutorials]"
+    "    !pip install --quiet git+https://github.com/theislab/scgen@$branch#egg=scgen[tutorials]"
    ]
   },
   {