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sourmash plugins - ideas dumping ground #2453
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import and export functionality for sketches and signatures to CSV, etc. taxonomy format loading, including via URLs; greengenes per #2538. support mechanisms discussed in #2694 cluster and cocluster a la #700 kSpider directly :) more hash manipulation approaches per #1266 upsetr plots per #1098 (comment) mastiff CLI search as plugin @bluegenes improved sourmash compare plotting #2587 including maybe PCoA style stuff |
could be kind of cool to support within-sample/between-sample metagenome distance display a la Amy Willis suggestion. @hehouts will no doubt be on it :) |
picklist plugins! It would be nice to allow more complex picklist-style actions. maybe even via taxonomy or non-standard metadata. |
search upgrade as a plugin? see: #2002 |
sketchall (fixing part of #2458) is in progress over at https://github.com/sourmash-bio/sourmash_plugin_sketchall |
making database covers... ref #1852 (comment) |
database auto download support - there's an issue on this somewhere... |
could make multigather a plugin? ref #1614 |
use a plugin to support the multifile sketch stuff that I implenented in sourmash-slainte! viz dib-lab/sourmash-slainte#7, and maybe dib-lab/sourmash-slainte#11 |
ref #1353
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