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Description
Last year, I opened #392. We agreed on splitting these documentation updates into chunks of size 10 to 20.
QC
For all wrappers added by this PR, I made sure that
input:
andoutput:
file paths in the resulting rule can be changed arbitrarily. Does not apply.threads: x
statement withx
being a reasonable default. Does not apply.map_reads
for a step that maps reads). Does not apply.environment.yaml
specifications follow the respective best practices. Does not apply.input:
oroutput:
). Does not apply.Snakefile
s and their entries are explained via comments (input:
/output:
/params:
etc.). Does not apply.stderr
and/orstdout
are logged correctly (log:
), depending on the wrapped tool. Does not apply.tempfile.gettempdir()
points to (see here; this also means that using any Pythontempfile
default behavior works). Does not apply.meta.yaml
contains a link to the documentation of the respective tool or commandSnakefile
s pass the linting (snakemake --lint
). Does not apply.Snakefile
s are formatted with snakefmt. Does not apply