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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

fix: Add additional dependencies to Datavzrd wrapper
#3374 opened Oct 30, 2024 by fxwiegand Loading…
7 tasks
3
fix: allow for arbitrary output files
#3373 opened Oct 30, 2024 by fgvieira Loading…
7 tasks done
13
fix: issue when input files are in subfolders
#3372 opened Oct 30, 2024 by fgvieira Loading…
7 tasks done
10
fix: add support for ht2l indexes
#3371 opened Oct 29, 2024 by fgvieira Loading…
7 tasks done
5
style: Code reformat
#3370 opened Oct 29, 2024 by fgvieira Loading…
7 tasks done
2
chore: release 4.7.7 autorelease: pending
#3369 opened Oct 29, 2024 by github-actions bot Loading…
1
perf: autobump bio/rubic bio/rubic
#3364 opened Oct 25, 2024 by snakedeploy-bot bot Loading…
1
perf: autobump bio/reference/ensembl-biomart-table bio/reference/ensembl-biomart-table
#3348 opened Oct 23, 2024 by snakedeploy-bot bot Loading…
1
feat: Add vg giraffe
#3302 opened Oct 16, 2024 by FelixMoelder • Draft
6 of 7 tasks
feat: create nanosim wrapper for all three modes of simulator.py
#3165 opened Sep 3, 2024 by dlaehnemann Loading…
7 tasks done
23
feat: added wrapper for Paraphase
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
74
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
24
perf: autobump bio/sortmerna bio/sortmerna
#2985 opened Jun 7, 2024 by snakedeploy-bot bot Loading…
5
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
8
feat: add aria2c wrapper
#2725 opened Mar 7, 2024 by fgvieira Loading…
1 task done
14
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
10
feat: add Orthanq wrappers for hla and virus applications
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
11
perf: autobump bio/gdc-client/download bio/gdc-client/download
#2031 opened Oct 31, 2023 by snakedeploy-bot bot Loading…
7
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: new inphared-db wrapper Stale
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
12
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
6
fix: Allow concurrent and large refgenie downloads Stale
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
8
perf: autobump bio/trimmomatic/se bio/trimmomatic/se
#869 opened Nov 11, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/trimmomatic/pe bio/trimmomatic/pe
#778 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
1
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